Files in mskilab/GxG
GxG: Genomic matrices and pairwise genomic features based on GenomicRanges and data.table
.github/.gitignore
.github/workflows/check-release.yaml
.github/workflows/test-coverage.yaml
.github/workflows/test-coverage.yaml~
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/GxG-package.R
R/GxG.R
R/RcppExports.R
R/apps.R
R/utils.R
README.md
docs/tutorial.Rmd
inst/extdata/hmec.bed
inst/extdata/hmec.matrix
inst/extdata/hmec_ord.bed
inst/extdata/normal.bam
inst/extdata/normal.bam.bai
inst/extdata/test.2bit
inst/extdata/test.hic
inst/extdata/tumor.bam
inst/extdata/tumor.bam.bai
man/GxG.Rd
man/alpha.Rd
man/c.Rd
man/cocount.Rd
man/cooler.Rd
man/deanchor.Rd
man/dedup.Rd
man/dodo.call.Rd
man/gM.Rd
man/gP.Rd
man/gr.val.Rd
man/grnorm.Rd
man/grpois.Rd
man/grunif.Rd
man/hicpro.Rd
man/homeology.event.Rd
man/homeology.wrapper.Rd
man/internal.Rd
man/intersect.Rd
man/length.Rd
man/seqinfo.Rd
man/seqlengths.Rd
man/setdiff.Rd
man/straw.Rd
man/sub-.gMatrix.Rd
man/sub-.gPair.Rd
man/union.Rd
man/unique.Rd
src/.Rhistory
src/GxG.so
src/Makevars
src/RcppExports.cpp
src/RcppExports.o
src/straw-R.cpp
src/straw-R.o
tests/.Rhistory
tests/testthat.R
tests/testthat/human_g1k_v37.no.extra.chrom.sizes
tests/testthat/test_GxG.R
tests/testthat/test_GxG.R~
