Files in msuprun/bbeaR
an R package and framework for epitope-specific antibody profiling
.DS_Store
.gitignore
DESCRIPTION
NAMESPACE
R/.DS_Store
R/CullenFreyPlot.R
R/Image.Plate.R
R/MFI2nMFI.R
R/Run_doNetCirclePlot.R
R/add.dimnames2db.R
R/add.names2vector.R
R/bbea.QC.Image.R
R/bbea.QC.Samples.R
R/bbea.QC.heatmap.counts.R
R/bbea.QC.heatmap.counts.byPlate.R
R/bbea.changeAnnotation.R
R/bbea.merge.R
R/bbea.read.csv.R
R/bbea.read.csv.all.R
R/bbea.subset.R
R/binarizeMFIbySD.R
R/colorsR.R
R/create.plate.db.R
R/doNetCirclePlot_peptides.R
R/get.cor.R
R/get.icc.R
R/getAnalyte.general.R
R/getAverageByReps.R
R/getCVbyPeptide.MFI.R
R/getCVbyPeptide.R
R/getCorrsByReps.R
R/getEnzymeCuts.R
R/getICCbyPeptide.R
R/getPCAs.R
R/getTopologyMFI.R
R/getTopologyPlotDB.R
R/makeTopologyPlotBase.R
R/mgsub.R
R/nMFI2Eset.R
R/pvca.plot.R
R/pvcaBatchAssess.bbea.R
README.md
bbeaR.Rproj
bbeaR_EggExample.pdf
bbeaR_MilkExample.pdf
data/Egg.RData
data/Milk.RData
docs/.DS_Store
docs/bbeaR_EggExample.html
docs/bbeaR_MilkExample.html
docs/index.html
inst/.DS_Store
inst/CITATION.txt
inst/extdata/BBEA_OVM_58p_IgE_patients.csv
inst/extdata/MOIT_IgEplate01.csv
inst/extdata/MOIT_IgEplate_02.csv
inst/extdata/MOIT_IgEplate_03.csv
inst/extdata/MOIT_IgEplate_04.csv
inst/extdata/egg_raw_data_example.png
inst/extdata/milk_raw_data_example.png
man/CullenFreyPlot.Rd
man/Image.Plate.Rd
man/MFI2nMFI.Rd
man/Run_doNetCirclePlot.Rd
man/bbea.QC.Image.Rd
man/bbea.QC.Samples.Rd
man/bbea.QC.heatmap.counts.Rd
man/bbea.QC.heatmap.counts.byPlate.Rd
man/bbea.changeAnnotation.Rd
man/bbea.read.csv.Rd
man/bbea.read.csv.all.Rd
man/bbea.subset.Rd
man/binarizeMFIbySD.Rd
man/create.plate.db.Rd
man/getAveragesByReps.Rd
man/getCVbyPeptide.MFI.Rd
man/getCVbyPeptide.Rd
man/getEnzymeCuts.Rd
man/getICCbyPeptide.Rd
man/getPCAs.Rd
man/getTopologyPlotDB.Rd
man/getTopologynMFI.Rd
man/makeTopologyPlotBase.Rd
man/mgsub.Rd
man/nMFI2Eset.Rd
man/pvca.plot.Rd
man/pvcaBatchAssess.bbea.Rd
vignettes/.DS_Store
vignettes/bbeaR_EggExample.Rmd
vignettes/bbeaR_EggExample.ipynb
vignettes/bbeaR_MilkExample.Rmd
vignettes/bbeaR_MilkExample.ipynb
