Man pages for mtalluto/NSmetabolism
N-Station Stream Metabolism Modelling
| computeAdvection | Compute advective flux in g/(m^3 * min) |
| computeGPP | Compute gross primary productivity from light (g O2 / m^2 *... |
| computeInputDOFlux | Computes the input dissolved oxygen flux |
| computeRF | Computes reaeration flux (g/(m^2 * day)) |
| dot-check_pressure_args | Validate input data for the air pressure function |
| dot-k_generate_pars | generate parameter sets (assuming independence) for k sims |
| dot-k_parameters | Constant for k parameters |
| dot-k_sd_sim | generate standard dev of k for a given set of stream... |
| dot-pr_site | get a vector of pressure for a single site |
| hPaToAtm | Convert hPa to atmospheres |
| idw_matrix | Inverse distance weighted interpolation |
| idw_river | Perform inverse distance weighting with a correction for... |
| inSituER | Compute ecosystem respiration at in-situ temperature (gO2 /... |
| interpolate_air_pressure | Interpolate air pressure for metabolism models |
| irradiance | Produce a model of irradiance for an entire study area or... |
| k_prior | Generate prior distributions for k using stream geometry |
| kT | Compute gas transfer velocity for oxygen at a given... |
| onestation | Calibrate a single station metabolism model |
| oneStation_dDOdt | Time derivative of DO concentration |
| oneStation_DOlogprob | Log posterior probability for the DO curve given empirical... |
| oneStation_DOPredict | Predict a time series of dissolved oxygen concentration |
| oneStation_DOSim | Produce posterior simulations for DO curve and GPP |
| oneStation_parTransform | Transfornm parameters for the one station model |
| osat | Compute dissolved oxygen saturation given temperature and... |
| pressureCorrection | Compute pressure at a given elevation from a calibration... |
| pressureFromElevation | Compute pressure (in hPa) from elevation |
| read_hobo | Read hobo light/temperature logger data |
| read_minidot | Get data from a directory of minidot files in txt (csv)... |
| setup_irradiance | Create rasters needed for irradiance analysis |
| twoStation_dDOdt | Time derivative of DO concentration |
| twoStation_DOlogprob | Log posterior probability for the DO curve given empirical... |
| twoStation_DOPredict | Predict a time series of dissolved oxygen concentration |
