Files in mweinroth/epi2me2r
Process Nanopore EPI2ME Output for Use in R
.Rbuildignore
.github/.gitignore
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/amr_raw_to_metagenomeseq.R
R/amr_raw_to_phyloseq.R
R/amr_read_taxonomy.R
R/data.R
R/generate_amr_taxonomy.R
R/generate_wimp_taxonomy.R
R/globals.R
R/read_in_amr_files.R
R/read_in_wimp_files.R
R/wimp_raw_to_metagenomeseq.R
R/wimp_raw_to_phyloseq.R
README.md
_pkgdown.yml
codemeta.json
cran-comments.md
data/CARD_taxonomy.RData
epi2me2r.Rproj
inst/CITATION
inst/epi2me.download.report.jpg
inst/extdata/example_amr_data/arma_288715.csv
inst/extdata/example_amr_data/arma_288716.csv
inst/extdata/example_metadata.csv
inst/extdata/example_wimp_data/324212_1777.csv
inst/extdata/example_wimp_data/324212_1778.csv
inst/metadata-example.jpg
man/CARD_taxonomy.Rd
man/amr_raw_to_metagenomeseq.Rd
man/amr_raw_to_phyloseq.Rd
man/amr_read_taxonomy.Rd
man/epi2me2r.Rd
man/generate_amr_taxonomy.Rd
man/generate_wimp_taxonomy.Rd
man/read_in_amr_files.Rd
man/read_in_wimp_files.Rd
man/wimp_raw_to_metagenomeseq.Rd
man/wimp_raw_to_phyloseq.Rd
tests/testthat.R
tests/testthat/test_amr.R
tests/testthat/test_wimp.R
vignettes/epi2me2r-vignette.Rmd
