myles-lewis/locuszoomr: Gene Locus Plot with Gene Annotations

Publication-ready regional gene locus plots similar to those produced by the web interface 'LocusZoom' <https://my.locuszoom.org>, but running locally in R. Genetic or genomic data with gene annotation tracks are plotted via R base graphics, 'ggplot2' or 'plotly', allowing flexibility and easy customisation including laying out multiple locus plots on the same page. It uses the 'LDlink' API <https://ldlink.nih.gov/?tab=apiaccess> to query linkage disequilibrium data from the 1000 Genomes Project and can overlay this on plots <doi:10.1093/bioadv/vbaf006>.

Getting started

Package details

Maintainer
LicenseGPL (>= 3)
Version0.3.8
URL https://github.com/myles-lewis/locuszoomr
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("myles-lewis/locuszoomr")
myles-lewis/locuszoomr documentation built on Feb. 28, 2025, 5:43 a.m.