| ClearDesertSpringsCache | Clear cached data |
| CloseDatabaseConnection | Close a connection to the Desert Springs Database |
| DisturbanceCount | Table with count and percent of springs with human use and... |
| expect_dataframe_equal | Test for dataframe equivalence |
| FetchAGOLLayers | Read data from the Desert Springs AGOL feature layers.... |
| fetchAllRecords | Fetch tabular data from AGOL |
| FlowCategoriesAnnualHeatMap | Summary heat map of flow categories for annual springs |
| FlowCategoriesAnnualPlot | Summary bar plot of flow categories for annual springs |
| FlowCategoriesContinuous | Summary table of flow categories for continuous springbrooks:... |
| FlowCategoriesDiscontinuous | Summary table of flow categories for discontinuous... |
| FlowCategoriesMap | Map of spring flow categories for latest field season at each... |
| FlowCategoriesThreeYearHeatMap | Summary heat map of flow categories for 3-yr springs |
| FlowCategoriesThreeYearPlot | Summary bar plot of flow categories for 3-yr springs |
| FlowCategoriesTotalPlot | Summary bar plot of flow categories for all springs |
| FlowModCount | Table with count and percent of springs with active and... |
| FlowModPlot | Bar plot with percent of springs with active and historic... |
| FlowModStatus | List of springs with active or historical flow modification |
| FormatPlot | Apply some standard formatting to a ggplot object. |
| GetColSpec | Get column specifications |
| GetRawData | Raw data dump. With no parameters, it returns the data in the... |
| GetSampleSizes | Compute sample size by spring and field season |
| GetSiteName | Get the name of a site from the site code |
| HumanUseMap | Map of human use observations |
| HumanUseObservations | Table with human use observations |
| HumanUsePlot | Bar plot with percent of springs with human use |
| InvasivePlants | Table of tamarisk, fountain grass, rabbitsfoot grass, date... |
| InvasivePlantsMap | Map of tamarisk, fountain grass, rabbitsfoot grass, date... |
| LifeformsPerSpringPlot | Bar plot showing the distribution of the number of life form... |
| LifeformsPresence | Table with summary of life form presence and rank |
| LivestockMap | Map of livestock disturbance observations |
| LivestockObservations | Table with livestock observations |
| LivestockPlot | Bar plot with percent of springs with livestock disturbance |
| LoadDesertSprings | Load raw data into package environment |
| LocationMap | Map of annual and 3-year desert springs monitoring locations |
| MostCommonLifeformsPlot | Bar plot showing the most common life form categories at... |
| OpenDatabaseConnection | Open a connection to the Desert Springs Database |
| pipe | Pipe operator |
| ProcessTidbiT | Convert raw TidbiT data into format importable into Aquarius... |
| qcCalibrationTimes | Check that instruments were calibrated within 1 day of site... |
| qcCompleteness | Calculate completeness (% of planned sites visited) |
| qcCompletenessPlot | Generate stacked bar plot for completeness (% of planned... |
| qcContinuousLength | Continuous surface water length > discontinuous surface water... |
| qcDischargeMissing | Volumetric or estimated discharge data are missing |
| qcDisturbanceFormatted | Intermediate step used to reformat disturbance categories... |
| qcDOCalCheck | Check for suspicious dissolved oxygen calibrations |
| qcDPLCheck | Return list of site visits that have any data categorized as... |
| qcFlowModDiscrepancies | List of springs that have been given different flow... |
| qcFlowModFormatted | Intermediate step used to reformat flow modification types... |
| qcFlowModNoHumanUse | Flow modification exists, but no Human Use disturbance... |
| qcFlowModTypes | List of springs where no flow modification was observed but a... |
| qcInvasiveDuplicates | Return list of invasive plants that were duplicated during... |
| qcLifeformPresentNoRank | Return list of visits with lifeform present, no rank |
| qcLifeformRankCheck | Return list of visits where multiple lifeforms have the same... |
| qcLocalDOCheck | Check dissolved oxygen calibrations for the use of non-local... |
| qcNotSampled | Return list of springs that were not sampled during a field... |
| qcNoVegLifeformsPresent | Return list of visits with no vegetation observed, lifeform... |
| qcOverallDisturbance | Overall disturbance is less than any other disturbance... |
| qcPanelCheck | Return lists of site visits to springs that are not currently... |
| qcPHCalCheck | Check for suspicious pH calibrations |
| qcPhotoDuplicates | Return list of repeat photo types that were duplicated during... |
| qcRepeatVisits | Return list of springs that were visited multiple times... |
| qcSensorDiscrepancies | Sensor was recovered but missing, or sensor was not recovered... |
| qcSensorDownloads | Sensors were retrieved, but download status is unknown |
| qcSensorHeatmap | Plot sensor retrieval results over time as a heatmap. |
| qcSensorProblems | Sensors were retrieved with problems or caveats |
| qcSensorsNotDeployed | Springs where a sensor was not deployed during a field season |
| qcSensorsNotRecovered | Springs where a sensor was not recovered during a field... |
| qcSensorSummary | Summarize sensor retrieval and download attempts by park and... |
| qcSpCondCalCheck | Check for suspicious specific conductance calibrations |
| qcSpCondStandardCheck | Check specific conductance calibrations for the use of low... |
| qcSpringDryWater | Spring is dry, estimated discharge > 0 or volumetric... |
| qcSpringNotDryNoDischarge | Spring is not dry, estimated discharge = 0 or volumetric... |
| qcSpringNotDryNoSpringbrook | Spring is not dry, springbrook dimensions = 0 |
| qcSpringNotDryNoWater | Spring is not dry, estimated discharge = 0 or volumetric... |
| qcSpringTypeDiscrepancies | Return list of springs that have been given different... |
| qcUniqueIDMissing | Check for missing calibration unique IDs |
| qcUnknownSensorIDs | Sensors with unknown ID or serial number |
| qcVegDuplicates | Return list of lifeform types that were duplicated during... |
| qcVegPresentNoLifeforms | Return list of visits with vegetation observed, no lifeform... |
| qcVisitDateTimelines | Generate timeline of dates that each spring has been visited |
| qcVisitsByDate | Return list of springs that have been visited on each date |
| qcVisitsBySite | Return list of dates that each spring has been visited |
| qcVisitTypeCheck | Return list of sites with any other combination of visit... |
| qcVolumetricFillEvents | Volumetric method was used, but there are fewer than five... |
| qcVolumetricMissing | Volumetric method was used, but there is no container volume,... |
| qcVolumetricTimes | Volumetric method was used, but the median fill time is less... |
| qcWildlifeDuplicates | Return list of wildlife types that were duplicated during... |
| qcWildlifeObservedNoEvidence | Wildlife observed and wildlife type specified, no evidence... |
| qcWildlifeObservedNoTypes | Wildlife observed, no wildlife type specified |
| qcWqFlags | Compile list of water quality values that have data quality... |
| qcWqLong | Intermediate step used to clean water quality data for stats... |
| qcWqSanity | Perform sanity check and compile list of potentially... |
| ReadAGOL | Read data from the Desert Springs AGOL feature layer. |
| ReadAndFilterData | Read desert springs data from database or .csv |
| ReadCSV | Read data from a folder of csv files |
| ReadSqlDatabase | Read data from the Desert Springs SQL database |
| SaveDataToCsv | Save desert springs analysis views as a set of .csv files |
| SpringbrookLengthsAnnualPlot | Box plot of springbrook lengths for annual springs at each... |
| SpringbrookLengthsThreeYearPlot | Box plot of springbrook lengths for three-year springs at... |
| SpringDischarge | Join flow condition, estimated discharge, and volumetric... |
| UngulatesEvidence | Table of springs with evidence of ungulate (sheep and deer)... |
| UngulatesMap | Map of springs with evidence of ungulate (sheep and deer)... |
| unk_sensors | View sensors with unknown ID/serial number |
| VolumetricMedian | Calculate median discharge and count of fill times for... |
| WqMapDO | Map of dissolved oxygen concentration at springs with surface... |
| WqMapPH | Map of pH at springs with surface water |
| WqMapSpCond | Map of specific conductance at springs with surface water |
| WqMapTemp | Map of water temperature at springs with surface water |
| WqMedian | Calculate median values for each water quality parameter for... |
| WqPlotDOmgL | Generate box plots for concentration dissolved oxygen for... |
| WqPlotDOPct | Generate box plots for percent dissolved oxygen for each park... |
| WqPlotGrid | Generate grid of box plots for core water quality parameters... |
| WqPlotPH | Generate box plots for pH for each park and year. Includes... |
| WqPlotSpCond | Generate box plots for specific conductance for each park and... |
| WqPlotSpCondmS | Generate box plots for specific conductance for each park and... |
| WqPlotTemp | Generate box plots for water temperature for each park and... |
| WqStats | Calculate quartile values for each water quality parameter... |
| WrangleAGOLData | Wrangle AGOL data into a set of dataframes structured for use... |
