| blur_mask | Blur Mask and Get Indices for Patches | 
| flexconn_conv_chain | FLEXCONN Convolution Chain | 
| flexconn_model | FLEXCONN Model | 
| flexconn_predict | Predict from FLEXCONN model | 
| get_matsize | Get Matrix Size to Input to Model | 
| get_patches | Get Patches from T1 and FLAIR image | 
| get_patch_from_volume | Get Patches from 3D Volume | 
| install_flexconn | Install FLEXCONN Requirements | 
| mask_indices | Get Mask Indices | 
| normalize_image | Normalize Image Based on the Peak | 
| numpy_percentile | Python Numpy Percentile | 
| pad_image | Pad Image | 
| patches_list | Make a patches list for a population of images | 
| patches_to_volume | Convert Patches to a Volume | 
| patchsize_to_padsize | Patch Size to Pad Size | 
| remove_small_components | Remove connected objects with volume <27 voxels | 
| volume_to_patches | Convert Volume to Patches | 
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