Man pages for neuroconductor-releases/oro.nifti
Rigorous - 'NIfTI' + 'ANALYZE' + 'AFNI' : Input / Output
| afni-class | Class "afni" |
| anlz | Constructor for Analyze |
| anlz-class | Class "anlz" |
| anlz-nifti-ops | Operations for Objects in the ANALYZE and NIfTI classes |
| as.anlz | as.anlz |
| as.nifti | as.nifti |
| audit_trail | Facilitate the Creation and Modification of Audit Trails |
| audit_trail-methods | Extract or Replace NIfTI Audit Trail |
| aux_file-methods | Extract Image Attribute 'aux_file' |
| bitpix-methods | Extract Image Attribute 'bitpix' |
| bitwise | Bitwise Conversion Subroutines |
| blend-methods | Merge Two NIfTI or ANALYZE Volumes |
| cal_img | Set Minimum/Maximum Values for NIfTI data |
| cal_max-methods | Extract Image Attribute 'cal_max' |
| cal_min-methods | Extract Image Attribute 'cal_min' |
| cal_units-methods | Extract Image Attribute 'cal_units' |
| coerce-methods | Force an Object to Belong to the ANALYZE or NIfTI Class |
| compressed-methods | Extract Image Attribute 'compressed' |
| convert_afni | Convert AFNI data codes |
| convert_anlz | Convert ANALYZE Codes |
| convert_nifti | Convert NIfTI Codes |
| data_type-methods | Extract Image Attribute 'data_type' |
| datatype-methods | Extract Image Attribute 'datatype' |
| db_name-methods | Extract Image Attribute 'db_name' |
| descrip-methods | Extract Image Attribute 'descrip' |
| dim_info-methods | Extract Image Attribute 'dim_info' |
| dim_-methods | Extract Image Attribute 'dim_' |
| dim_un0-methods | Extract Image Attribute 'dim_un0' |
| drop_img_dim | Drop Image Dimension |
| exp_date-methods | Extract Image Attribute 'exp_date' |
| exp_time-methods | Extract Image Attribute 'exp_time' |
| extender-methods | Extract Image Attribute 'extender' |
| extents-methods | Extract Image Attribute 'extents' |
| field_skip-methods | Extract Image Attribute 'field_skip' |
| funused1-methods | Extract Image Attribute 'funused1' |
| funused2-methods | Extract Image Attribute 'funused2' |
| funused3-methods | Extract Image Attribute 'funused3' |
| generated-methods | Extract Image Attribute 'generated' |
| glmax-methods | Extract Image Attribute 'glmax' |
| glmin-methods | Extract Image Attribute 'glmin' |
| hist_un0-methods | Extract Image Attribute 'hist_un0' |
| hkey_un0-methods | Extract Image Attribute 'hkey_un0' |
| hotmetal | Hot Metal Color Table |
| image-methods | Methods for Function 'image' |
| img_data-methods | Extract Image Attribute '.Data' |
| img_length | Gets Image Length in Each Dimension |
| integerTranslation | integerTranslation |
| intent_code-methods | Extract Image Attribute 'intent_code' |
| intent_name-methods | Extract Image Attribute 'intent_name' |
| intent_p1-methods | Extract Image Attribute 'intent_p1' |
| intent_p2-methods | Extract Image Attribute 'intent_p2' |
| intent_p3-methods | Extract Image Attribute 'intent_p3' |
| internalImage-class | "internalImage" class |
| is_afni | check object |
| is_anlz | check object |
| is_nifti | check object |
| magic-methods | Extract Image Attribute 'magic' |
| miscellaneous | Dimension Accessor Functions |
| nifti | Constructor for NIfTI |
| nifti_assign-methods | Methods for Function [<- in Package 'base' |
| niftiAuditTrail-class | Class "niftiAuditTrail" |
| nifti-class | Class "nifti" |
| niftiExtension-class | Class "niftiExtension" |
| niftiExtensionSection-class | Class "niftiExtensionSection" |
| niftiImage-class | "niftiImage" class |
| niftiops | Operations for NIfTI Objects |
| nii2oro | Convert RNifti niftiImage to oro.nifti nifti object |
| omax-methods | Extract Image Attribute 'omax' |
| omin-methods | Extract Image Attribute 'omin' |
| onefile | Creates the 'onefile' Specification for NIfTI |
| orientation-methods | Extract NIfTI 3D Image Orientation |
| orient-methods | Extract Image Attribute 'orient' |
| origin-methods | Extract Image Attribute 'origin' |
| oro2nii | Convert oro.nifti nifti to RNifti niftiImage object |
| orthographic-methods | Methods for Function 'orthographic' in Package 'dcemriS4' |
| overlay-methods | Methods for Function overlay |
| patient_id-methods | Extract Image Attribute 'patient_id' |
| performPermutation | Transform array with orthogonal permutation matrix |
| pixdim-methods | Extract Image Attribute 'pixdim' |
| qform_code-methods | Extract Image Attribute 'qform_code' |
| qoffset_x-methods | Extract Image Attribute 'qoffset_x' |
| qoffset_y-methods | Extract Image Attribute 'qoffset_y' |
| qoffset_z-methods | Extract Image Attribute 'qoffset_z' |
| quatern_b-methods | Extract Image Attribute 'quatern_b' |
| quatern_c-methods | Extract Image Attribute 'quatern_c' |
| quatern_d-methods | Extract Image Attribute 'quatern_d' |
| quaternion2rotation | Convert Quaternion into a Rotation Matrix |
| read_afni | readAFNI |
| read_anlz | readANALYZE |
| read_nifti | readNIfTI |
| regular-methods | Extract Image Attribute 'regular' |
| remove | Remove File Extensions Around the NIfTI/ANALYZE Formats |
| reorient | Reorient Image using NIfTI header |
| scannum-methods | Extract Image Attribute 'scannum' |
| scl_inter-methods | Extract Image Attribute 'scl_inter' |
| scl_slope-methods | Extract Image Attribute 'scl_slope' |
| session_error-methods | Extract Image Attribute 'session_error' |
| sform_code-methods | Extract Image Attribute 'sform_code' |
| sizeof_hdr-methods | Extract Image Attribute 'sizeof_hdr' |
| slice_code-methods | Extract Image Attribute 'slice_code' |
| slice_duration-methods | Extract Image Attribute 'slice_duration' |
| slice_end-methods | Extract Image Attribute 'slice_end' |
| slice-methods | Methods for Function 'slice' |
| slice_overlay-methods | Methods for Function slice_overlay |
| slice_start-methods | Extract Image Attribute 'slice_start' |
| smax-methods | Extract Image Attribute 'smax' |
| smin-methods | Extract Image Attribute 'smin' |
| srow_x-methods | Extract Image Attribute 'srow_x' |
| srow_y-methods | Extract Image Attribute 'srow_y' |
| srow_z-methods | Extract Image Attribute 'srow_z' |
| start_field-methods | Extract Image Attribute 'start_field' |
| tim_colors | Tim's Useful Color Table |
| toffset-methods | Extract Image Attribute 'toffset' |
| transformCoordinate | Translate Voxel Coordinates |
| unused1-methods | Extract Image Attribute 'unused1' |
| verified-methods | Extract Image Attribute 'verified' |
| views-methods | Extract Image Attribute 'views' |
| vols_added-methods | Extract Image Attribute 'vols_added' |
| voxdim | Gets Voxel Dimensions |
| vox_offset-methods | Extract Image Attribute 'vox_offset' |
| voxres | Gets Voxel Resolution |
| vox_units-methods | Extract Image Attribute 'vox_units' |
| write_afni-methods | writeAFNI |
| write_anlz | writeANALYZE |
| write_nifti | writeNIfTI |
| xyzt_units-methods | Extract Image Attribute 'xyzt_units' |
| zero_trans | Change Intercept to 0 and Slope to 1 in NIfTI Object |
