.Rbuildignore
          
        
          
            
            .Rproj.user/6CEC2540/console06/INDEX001
          
        
          
            
            .Rproj.user/6CEC2540/cpp-definition-cache
          
        
          
            
            .Rproj.user/6CEC2540/pcs/debug-breakpoints.pper
          
        
          
            
            .Rproj.user/6CEC2540/pcs/files-pane.pper
          
        
          
            
            .Rproj.user/6CEC2540/pcs/source-pane.pper
          
        
          
            
            .Rproj.user/6CEC2540/pcs/windowlayoutstate.pper
          
        
          
            
            .Rproj.user/6CEC2540/pcs/workbench-pane.pper
          
        
          
            
            .Rproj.user/6CEC2540/persistent-state
          
        
          
            
            .Rproj.user/6CEC2540/rmd-outputs
          
        
          
            
            .Rproj.user/6CEC2540/saved_source_markers
          
        
          
            
            .Rproj.user/6CEC2540/sources/prop/1DF1CCE5
          
        
          
            
            .Rproj.user/6CEC2540/sources/prop/44D0F4F2
          
        
          
            
            .Rproj.user/6CEC2540/sources/prop/98B720F1
          
        
          
            
            .Rproj.user/6CEC2540/sources/prop/AA9D10D3
          
        
          
            
            .Rproj.user/6CEC2540/sources/prop/AE8D68C8
          
        
          
            
            .Rproj.user/6CEC2540/sources/prop/B258BB91
          
        
          
            
            .Rproj.user/6CEC2540/sources/prop/BE32BA4F
          
        
          
            
            .Rproj.user/6CEC2540/sources/prop/E1267DF4
          
        
          
            
            .Rproj.user/6CEC2540/sources/prop/INDEX
          
        
          
            
            .Rproj.user/shared/notebooks/patch-chunk-names
          
        
          
            
            .Rproj.user/shared/notebooks/paths
          
        
          
            
            .gitignore
          
        
          
            
            DESCRIPTION
          
        
          
            
            LICENSE
          
        
          
            
            NAMESPACE
          
        
          
            
            R/runApp.R
          
        
          
            
            README.md
          
        
          
            
            inst/pythonScript/combineTE.py
          
        
          
            
            inst/pythonScript/extraTEmergep_pall.py
          
        
          
            
            inst/pythonScript/extraTEtruemerge.py
          
        
          
            
            inst/pythonScript/filterShortTE.py
          
        
          
            
            inst/pythonScript/fuseLtrFinderResult.py
          
        
          
            
            inst/pythonScript/get1seq.py
          
        
          
            
            inst/pythonScript/reformatRMgff.py
          
        
          
            
            inst/pythonScript/trueMerge.py
          
        
          
            
            inst/shinyapp/global.R
          
        
          
            
            inst/shinyapp/server.R
          
        
          
            
            inst/shinyapp/ui.R
          
        
          
            
            man/hello.Rd
          
        
          
            
            repeatcraft.Rproj
          
        
          
            
            screenshot.png