API for nijibabulu/CTCAnalysis
Differential Expression Analysis Journal
| Global functions | |
|---|---|
| %<-% | Man page |
| %>% | Man page |
| DESeq2MAPlot | Source code |
| DESeq2MAPlots | Source code |
| DESeq2VolcanoPlot | Source code |
| DESeq2VolcanoPlots | Source code |
| add_col_data | Source code |
| alter_col_tbl | Source code |
| barplotGeneCounts | Source code |
| barplotNull | Source code |
| boxplotGeneCounts | Source code |
| boxplotNull | Source code |
| colTbl | Source code |
| computeCov | Source code |
| computeDESeqNormalizedValues | Source code |
| computeFPKM | Source code |
| computeTPM | Source code |
| computeUncenteredScale | Source code |
| countsTarget | Source code |
| enhanceDESeq2CombinedTbl | Source code |
| enhanceDESeq2ResultTbl | Source code |
| enhancedGseaResultsTbl | Source code |
| ensureLongAttribute | Source code |
| ensureTargetAttribute | Source code |
| expand_sample_names | Source code |
| exprHeatmap | Source code |
| findSampleTypeClassifier | Source code |
| findSampleTypeClassifier.tbl | Source code |
| genePCAPlot | Source code |
| geneSummaries | Source code |
| geneSummaries.tbl | Source code |
| gseaAnalysis | Source code |
| gseaDotPlot | Source code |
| gseaPathwayPlot | Source code |
| gseaVolcanoPlot | Source code |
| lm_eqn | Source code |
| loadFeatureCountData | Source code |
| loadLibrarySizes | Source code |
| longCounts | Source code |
| matrixToLong | Source code |
| maxGene.tbl | Source code |
| maxGenePlot | Source code |
| merge_featureCounts | Source code |
| merge_featureCountsFiles | Source code |
| merge_featureCountsSummaries | Source code |
| plotSampleTypeClassfier | Source code |
| plot_roc | Source code |
| plot_summary_stats | Source code |
| plot_summary_stats.tbl_df | Source code |
| prep_DESeq2 | Source code |
| read_featureCounts | Source code |
| read_featureCountsSummary | Source code |
| rowTbl | Source code |
| run_DESeq2_results | Source code |
| sampleClustPlot | Source code |
| seLongCounts | Source code |
| summaryPlot | Source code |
| table_add_df_sheet | Source code |
| table_add_notes | Source code |
| table_output_p116a_excel | Source code |
| translated_factor | Source code |
| wilcoxon_de | Source code |
