.Rbuildignore
.github/.gitignore
.github/workflows/check-full.yaml
.gitignore
ASQ3.Rproj
DESCRIPTION
LICENSE.md
NAMESPACE
R/ASQ3-package.R
R/data-prep.R
R/dataset.R
R/plot_gam.R
R/report_stats.R
README.Rmd
README.md
_pkgdown.yml
data-raw/clean_dataset.R
data-raw/dataset.csv
data-raw/helpers/colnames
data-raw/helpers/colorder
data/dataset.rda
docs/404.html
docs/LICENSE.html
docs/articles/articles/correlations.html
docs/articles/articles/descriptives.html
docs/articles/articles/eda.html
docs/articles/correlations.html
docs/articles/descriptives.html
docs/articles/eda.html
docs/articles/eda_files/figure-html/unnamed-chunk-10-1.png
docs/articles/eda_files/figure-html/unnamed-chunk-11-1.png
docs/articles/eda_files/figure-html/unnamed-chunk-12-1.png
docs/articles/eda_files/figure-html/unnamed-chunk-13-1.png
docs/articles/eda_files/figure-html/unnamed-chunk-14-1.png
docs/articles/eda_files/figure-html/unnamed-chunk-15-1.png
docs/articles/eda_files/figure-html/unnamed-chunk-16-1.png
docs/articles/eda_files/figure-html/unnamed-chunk-17-1.png
docs/articles/eda_files/figure-html/unnamed-chunk-18-1.png
docs/articles/eda_files/figure-html/unnamed-chunk-19-1.png
docs/articles/eda_files/figure-html/unnamed-chunk-2-1.png
docs/articles/eda_files/figure-html/unnamed-chunk-20-1.png
docs/articles/eda_files/figure-html/unnamed-chunk-20-2.png
docs/articles/eda_files/figure-html/unnamed-chunk-3-1.png
docs/articles/eda_files/figure-html/unnamed-chunk-4-1.png
docs/articles/eda_files/figure-html/unnamed-chunk-5-1.png
docs/articles/eda_files/figure-html/unnamed-chunk-6-1.png
docs/articles/eda_files/figure-html/unnamed-chunk-7-1.png
docs/articles/eda_files/figure-html/unnamed-chunk-8-1.png
docs/articles/eda_files/figure-html/unnamed-chunk-9-1.png
docs/articles/index.html
docs/authors.html
docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js
docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.1.0/bootstrap.min.css
docs/deps/data-deps.txt
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/index.html
docs/link.svg
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/ASQ3-package.html
docs/reference/data-prep.html
docs/reference/dataset.html
docs/reference/figures/lifecycle-archived.svg
docs/reference/figures/lifecycle-defunct.svg
docs/reference/figures/lifecycle-deprecated.svg
docs/reference/figures/lifecycle-experimental.svg
docs/reference/figures/lifecycle-maturing.svg
docs/reference/figures/lifecycle-questioning.svg
docs/reference/figures/lifecycle-stable.svg
docs/reference/figures/lifecycle-superseded.svg
docs/reference/figures/matrixplot.pdf
docs/reference/index.html
docs/search.json
docs/sitemap.xml
man/ASQ3-package.Rd
man/data_prep.Rd
man/dataset.Rd
man/figures/lifecycle-archived.svg
man/figures/lifecycle-defunct.svg
man/figures/lifecycle-deprecated.svg
man/figures/lifecycle-experimental.svg
man/figures/lifecycle-maturing.svg
man/figures/lifecycle-questioning.svg
man/figures/lifecycle-stable.svg
man/figures/lifecycle-superseded.svg
man/figures/matrixplot.pdf
man/format_p.Rd
man/gam_binomial.Rd
man/gam_confounders.Rd
man/near.Rd
man/plot_gam.Rd
man/report_chi.Rd
man/report_kruskal.Rd
man/report_overall.Rd
man/report_pairwise_wilcox.Rd
man/report_slopes.Rd
man/report_smooth.Rd
man/report_wilcox.Rd
manuscript/CICYPE/css/logo.css
manuscript/CICYPE/css/media.css
manuscript/CICYPE/css/styles.css
manuscript/CICYPE/css/title-slide.css
manuscript/CICYPE/functions.R
manuscript/CICYPE/index.html
manuscript/CICYPE/index.qmd
manuscript/CICYPE/index_files/libs/clipboard/clipboard.min.js
manuscript/CICYPE/index_files/libs/quarto-html/popper.min.js
manuscript/CICYPE/index_files/libs/quarto-html/quarto-html.min.css
manuscript/CICYPE/index_files/libs/quarto-html/quarto-syntax-highlighting.css
manuscript/CICYPE/index_files/libs/quarto-html/tabby.min.js
manuscript/CICYPE/index_files/libs/quarto-html/tippy.css
manuscript/CICYPE/index_files/libs/quarto-html/tippy.umd.min.js
manuscript/CICYPE/index_files/libs/revealjs/dist/reset.css
manuscript/CICYPE/index_files/libs/revealjs/dist/reveal.css
manuscript/CICYPE/index_files/libs/revealjs/dist/reveal.esm.js
manuscript/CICYPE/index_files/libs/revealjs/dist/reveal.esm.js.map
manuscript/CICYPE/index_files/libs/revealjs/dist/reveal.js
manuscript/CICYPE/index_files/libs/revealjs/dist/reveal.js.map
manuscript/CICYPE/index_files/libs/revealjs/dist/theme/fonts/league-gothic/LICENSE
manuscript/CICYPE/index_files/libs/revealjs/dist/theme/fonts/league-gothic/league-gothic.css
manuscript/CICYPE/index_files/libs/revealjs/dist/theme/fonts/league-gothic/league-gothic.eot
manuscript/CICYPE/index_files/libs/revealjs/dist/theme/fonts/league-gothic/league-gothic.ttf
manuscript/CICYPE/index_files/libs/revealjs/dist/theme/fonts/league-gothic/league-gothic.woff
manuscript/CICYPE/index_files/libs/revealjs/dist/theme/fonts/source-sans-pro/LICENSE
manuscript/CICYPE/index_files/libs/revealjs/dist/theme/fonts/source-sans-pro/source-sans-pro-italic.eot
manuscript/CICYPE/index_files/libs/revealjs/dist/theme/fonts/source-sans-pro/source-sans-pro-italic.ttf
manuscript/CICYPE/index_files/libs/revealjs/dist/theme/fonts/source-sans-pro/source-sans-pro-italic.woff
manuscript/CICYPE/index_files/libs/revealjs/dist/theme/fonts/source-sans-pro/source-sans-pro-regular.eot
manuscript/CICYPE/index_files/libs/revealjs/dist/theme/fonts/source-sans-pro/source-sans-pro-regular.ttf
manuscript/CICYPE/index_files/libs/revealjs/dist/theme/fonts/source-sans-pro/source-sans-pro-regular.woff
manuscript/CICYPE/index_files/libs/revealjs/dist/theme/fonts/source-sans-pro/source-sans-pro-semibold.eot
manuscript/CICYPE/index_files/libs/revealjs/dist/theme/fonts/source-sans-pro/source-sans-pro-semibold.ttf
manuscript/CICYPE/index_files/libs/revealjs/dist/theme/fonts/source-sans-pro/source-sans-pro-semibold.woff
manuscript/CICYPE/index_files/libs/revealjs/dist/theme/fonts/source-sans-pro/source-sans-pro-semibolditalic.eot
manuscript/CICYPE/index_files/libs/revealjs/dist/theme/fonts/source-sans-pro/source-sans-pro-semibolditalic.ttf
manuscript/CICYPE/index_files/libs/revealjs/dist/theme/fonts/source-sans-pro/source-sans-pro-semibolditalic.woff
manuscript/CICYPE/index_files/libs/revealjs/dist/theme/fonts/source-sans-pro/source-sans-pro.css
manuscript/CICYPE/index_files/libs/revealjs/dist/theme/quarto.css
manuscript/CICYPE/index_files/libs/revealjs/plugin/highlight/highlight.esm.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/highlight/highlight.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/highlight/monokai.css
manuscript/CICYPE/index_files/libs/revealjs/plugin/highlight/plugin.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/highlight/zenburn.css
manuscript/CICYPE/index_files/libs/revealjs/plugin/markdown/markdown.esm.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/markdown/markdown.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/markdown/plugin.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/math/katex.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/math/math.esm.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/math/math.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/math/mathjax2.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/math/mathjax3.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/math/plugin.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/notes/notes.esm.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/notes/notes.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/notes/plugin.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/notes/speaker-view.html
manuscript/CICYPE/index_files/libs/revealjs/plugin/pdf-export/pdfexport.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/pdf-export/plugin.yml
manuscript/CICYPE/index_files/libs/revealjs/plugin/quarto-line-highlight/line-highlight.css
manuscript/CICYPE/index_files/libs/revealjs/plugin/quarto-line-highlight/line-highlight.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/quarto-line-highlight/plugin.yml
manuscript/CICYPE/index_files/libs/revealjs/plugin/quarto-support/footer.css
manuscript/CICYPE/index_files/libs/revealjs/plugin/quarto-support/plugin.yml
manuscript/CICYPE/index_files/libs/revealjs/plugin/quarto-support/support.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/reveal-menu/menu.css
manuscript/CICYPE/index_files/libs/revealjs/plugin/reveal-menu/menu.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/reveal-menu/plugin.yml
manuscript/CICYPE/index_files/libs/revealjs/plugin/reveal-menu/quarto-menu.css
manuscript/CICYPE/index_files/libs/revealjs/plugin/reveal-menu/quarto-menu.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/search/plugin.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/search/search.esm.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/search/search.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/zoom/plugin.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/zoom/zoom.esm.js
manuscript/CICYPE/index_files/libs/revealjs/plugin/zoom/zoom.js
manuscript/CICYPE/logo.png
manuscript/CICYPE/prep-workspace.R
manuscript/CICYPE/references.bib
manuscript/CICYPE/resources/baby.mp4
manuscript/CICYPE/resources/boy_vid.mp4
manuscript/CICYPE/resources/boy_vid_2.mp4
manuscript/CICYPE/resources/code/confounders.R
manuscript/CICYPE/resources/code/density.R
manuscript/CICYPE/resources/code/gams-vs-lm.R
manuscript/CICYPE/resources/code/main-effect.R
manuscript/CICYPE/resources/code/risk-effects.R
manuscript/CICYPE/resources/code/table-1.R
manuscript/CICYPE/resources/code/table-2.R
manuscript/CICYPE/resources/code/table-3.R
manuscript/CICYPE/resources/code/table-main-effects.R
manuscript/CICYPE/resources/code/table-risk-effects.R
manuscript/CICYPE/resources/conclusion.mp4
manuscript/CICYPE/resources/confounders.svg
manuscript/CICYPE/resources/density.svg
manuscript/CICYPE/resources/end_intro.mp4
manuscript/CICYPE/resources/ethics.mp4
manuscript/CICYPE/resources/gams_vs_lm.svg
manuscript/CICYPE/resources/girl_playing.mp4
manuscript/CICYPE/resources/group_discussion.mp4
manuscript/CICYPE/resources/in_results.mp4
manuscript/CICYPE/resources/in_results_2.mp4
manuscript/CICYPE/resources/measures.mp4
manuscript/CICYPE/resources/methods_design.jpeg
manuscript/CICYPE/resources/participants.mp4
manuscript/CICYPE/resources/procedures.mp4
manuscript/CICYPE/resources/results_main_CG.svg
manuscript/CICYPE/resources/results_main_CM.svg
manuscript/CICYPE/resources/results_main_FM.svg
manuscript/CICYPE/resources/results_main_GM.svg
manuscript/CICYPE/resources/results_main_PS.svg
manuscript/CICYPE/resources/results_risk_CG.svg
manuscript/CICYPE/resources/results_risk_CM.svg
manuscript/CICYPE/resources/results_risk_FM.svg
manuscript/CICYPE/resources/results_risk_GM.svg
manuscript/CICYPE/resources/results_risk_PS.svg
manuscript/CICYPE/resources/rstudio-desktop-screen.png
manuscript/CICYPE/resources/rstudio.png
manuscript/CICYPE/resources/simpson_paradox.png
manuscript/CICYPE/resources/table-1.RDS
manuscript/CICYPE/resources/table-2.RDS
manuscript/CICYPE/resources/table-3.RDS
manuscript/CICYPE/resources/table-main-CG.RDS
manuscript/CICYPE/resources/table-main-CM.RDS
manuscript/CICYPE/resources/table-main-FM.RDS
manuscript/CICYPE/resources/table-main-GM.RDS
manuscript/CICYPE/resources/table-main-PS.RDS
manuscript/CICYPE/resources/table-risk-CG.RDS
manuscript/CICYPE/resources/table-risk-CM.RDS
manuscript/CICYPE/resources/table-risk-FM.RDS
manuscript/CICYPE/resources/table-risk-GM.RDS
manuscript/CICYPE/resources/table-risk-PS.RDS
manuscript/CICYPE/resources/table-risk-smooth.RDS
manuscript/CICYPE/resources/title-background.jpeg
manuscript/CICYPE/resources/writing_kid.mp4
manuscript/captions.Rmd
manuscript/captions.docx
manuscript/figures/fig-1.R
manuscript/figures/fig-1.jpeg
manuscript/figures/fig-1.pdf
manuscript/figures/fig-2.R
manuscript/figures/fig-2.jpeg
manuscript/figures/fig-2.pdf
manuscript/figures/fig-3.R
manuscript/figures/fig-3.jpeg
manuscript/figures/fig-3.pdf
manuscript/figures/make_plots.R
manuscript/make_ms.R
manuscript/manuscript.Rmd
manuscript/manuscript.docx
manuscript/misc/STROBE checklist.doc
manuscript/misc/ref.bib
manuscript/misc/ref.docx
manuscript/misc/setup.R
manuscript/misc/vancouver-dmcn.csl
manuscript/submission_docs/ASQ3-files.zip
manuscript/supplementary.Rmd
manuscript/supplementary.docx
manuscript/tables/table-1.RDS
manuscript/tables/table-1.docx
manuscript/tables/table-1.html
manuscript/tables/table.R
manuscript/versioning/MS v10.docx
manuscript/versioning/MS v11.docx
manuscript/versioning/MS v3.docx
manuscript/versioning/MS v4.docx
manuscript/versioning/MS v9.docx
vignettes/.gitignore
vignettes/articles/_eda-models
vignettes/articles/correlations.Rmd
vignettes/articles/descriptives.Rmd
vignettes/articles/eda.Rmd