Man pages for nissandjac/PacifichakeMSE
Management strategy evaluation of Pacific hake
| AAV | Title |
| calcF | Title |
| calcMeanAge | Title |
| calcSE | Title |
| calcSSB0 | Title |
| create_TMB_data | Title |
| df_lists | Title |
| df_lists_OM | Title |
| dummy | Roxygen commands |
| extract_fixed | Title |
| fnMSE | Title |
| fn_plot_MSE | Title |
| fn_rerun_OM | Rerun an OM from an MSE by using catch as input Not... |
| fnsum | sum spatial and seasonal data into a data frame |
| getF | Calculate the fishing mortality based on catch |
| getParameters | Load parameters for tmb model |
| getParameters_csv | Title |
| getParameters_OM | Create a list of parameters for TMB |
| getParameters_ss | Load parameters from stock synthesis |
| getRefpoint | C |
| getSelec | Title |
| getUncertainty | Calculate and organize the uncertainty on parameters and... |
| hake_objectives | Title |
| hake_violin | Violin plot of the MSE results |
| load_data | Load hake data for operating model |
| load_data_seasons | Load the hake data |
| load_data_ss | Set up a TMB data list from a SS object |
| PacifichakeMSE-package | Pacific hake MSE package |
| plotSelectivity | Title |
| plotValues | Plot the estimated or derived value from a TMB model |
| plotViolin | Title |
| processMSE | Turn whole list into a concanated polished data frame |
| run.agebased.true.catch | Run an agebased model |
| runfuture_OM | Run simulatons of the operating model into the future |
| run_multiple_MSEs | Iterate the pacific hake MSE |
| run_multiple_OMs | Title |
| summarizeMSE | Title |
