Files in nissandjac/commspectrum

Community size spectrum simulator

OmegaThreeFisheries/README.md OmegaThreeFisheries/RelevantPDFs/1-s2.0-S0022098100001593-main.pdf OmegaThreeFisheries/RelevantPDFs/Anthony_et_al_2000 Lipid content and energy density of forage fishes.pdf OmegaThreeFisheries/RelevantPDFs/Fish Matters Importance of Aquatic Foods in Human Nutrition and Global Food Supply.pdf OmegaThreeFisheries/RelevantPDFs/Vlachavas et al. - 2019 - Using genetic methods for analysis of fish meals a.pdf OmegaThreeFisheries/data/catch_df.R OmegaThreeFisheries/data/datras.R OmegaThreeFisheries/data/life-history.R OmegaThreeFisheries/runAnalysis.R OmegaThreeFisheries/runSizespectrum/IterateSpectrum.R OmegaThreeFisheries/runSizespectrum/YieldCalc.R OmegaThreeFisheries/runSizespectrum/YieldCalcSize.R OmegaThreeFisheries/runSizespectrum/baseparameters.R OmegaThreeFisheries/runSizespectrum/baserun.R OmegaThreeFisheries/runSizespectrum/baserun_changingF.R OmegaThreeFisheries/runSizespectrum/baserun_multi.R OmegaThreeFisheries/runSizespectrum/calcMSY.R OmegaThreeFisheries/runSizespectrum/calcMSY_optim.R OmegaThreeFisheries/runSizespectrum/calcSSB.R OmegaThreeFisheries/runSizespectrum/calcequ.R OmegaThreeFisheries/runSizespectrum/calibrationPlots.R OmegaThreeFisheries/runSizespectrum/debugCalcMSY.R OmegaThreeFisheries/runSizespectrum/fishing.R OmegaThreeFisheries/runSizespectrum/fitSpectrum_R.R OmegaThreeFisheries/runSizespectrum/getPredkernel.R OmegaThreeFisheries/runSizespectrum/getPsi.R OmegaThreeFisheries/runSizespectrum/gradient.R OmegaThreeFisheries/runSizespectrum/load_files.R OmegaThreeFisheries/runSizespectrum/makegrid.R OmegaThreeFisheries/runSizespectrum/plotBiomass.R OmegaThreeFisheries/runSizespectrum/plotBiomassDens.R OmegaThreeFisheries/runSizespectrum/plotBiomasstime.R OmegaThreeFisheries/runSizespectrum/plotFeedingLevel.R OmegaThreeFisheries/runSizespectrum/plotGrowth.R OmegaThreeFisheries/runSizespectrum/plotMortality.R OmegaThreeFisheries/runSizespectrum/plotSpectrum.R OmegaThreeFisheries/runSizespectrum/runModels.R OmegaThreeFisheries/runSizespectrum/testLoops.R OmegaThreeFisheries/runSizespectrum/testSims.R PacifichakeMSE/Simple MSE/SSB0calc.R PacifichakeMSE/Simple MSE/getSelec.R PacifichakeMSE/Simple MSE/getUncertainty.R PacifichakeMSE/Simple MSE/load_data.R PacifichakeMSE/Simple MSE/plotUncertainty.R PacifichakeMSE/Simple MSE/runMSE_true.R PacifichakeMSE/Simple MSE/run_agebased_model_true.R PacifichakeMSE/Simple MSE/ylimits.R PacifichakeMSE/Spatial MSE/SSB0calc.R PacifichakeMSE/Spatial MSE/getSelec.R PacifichakeMSE/Spatial MSE/getUncertainty.R PacifichakeMSE/Spatial MSE/load_data.R PacifichakeMSE/Spatial MSE/plotUncertainty.R PacifichakeMSE/Spatial MSE/runMSE_true.R PacifichakeMSE/Spatial MSE/run_agebased_model_true.R PacifichakeMSE/Spatial MSE/ylimits.R R/IterateSpectrum.R R/YieldCalc.R R/app.R R/baseparameters.R R/baserun.R R/calcSSB.R R/calibrationPlots.R R/fishing.R R/gradient.R R/makegrid.R R/runManual.R README.md cspectrum/R/IterateSpectrum.R cspectrum/R/YieldCalc.R cspectrum/R/app.R cspectrum/R/baseparameters.R cspectrum/R/baserun.R cspectrum/R/calcSSB.R cspectrum/R/calcequ.R cspectrum/R/calibrationPlots.R cspectrum/R/fishing.R cspectrum/R/gradient.R cspectrum/R/load_files.R cspectrum/R/makegrid.R cspectrum/cspectrum/R/IterateSpectrum.R cspectrum/cspectrum/R/YieldCalc.R cspectrum/cspectrum/R/app.R cspectrum/cspectrum/R/baseparameters.R cspectrum/cspectrum/R/baserun.R cspectrum/cspectrum/R/calcSSB.R cspectrum/cspectrum/R/calcequ.R cspectrum/cspectrum/R/calibrationPlots.R cspectrum/cspectrum/R/fishing.R cspectrum/cspectrum/R/gradient.R cspectrum/cspectrum/R/load_files.R cspectrum/cspectrum/R/makegrid.R cspectrum/cspectrum/man/runCommunitySpectrum.Rd cspectrum/man/runCommunitySpectrum.Rd man/plotResults.Rd man/runCommunitySpectrum.Rd man/runFoodWebModel.Rd man/runTraitBasedModel.Rd