API for njtierney/conmat
Builds Contact Matrices using GAMs and Population Data

Global functions
%>% Man page
abs-age-education Man page
abs-age-work Man page
abs_abbreviate_states Man page Source code
abs_age_data Man page
abs_age_education_lga Man page Source code
abs_age_education_state Man page Source code
abs_age_lga Man page Source code
abs_age_state Man page Source code
abs_age_work_lga Man page Source code
abs_age_work_state Man page Source code
abs_avg_school Man page
abs_avg_work Man page
abs_education_state Man page
abs_education_state_2020 Man page
abs_employ_age_lga Man page
abs_household_lga Man page
abs_lga_lookup Man page
abs_pop_age_lga_2016 Man page
abs_pop_age_lga_2020 Man page
abs_state_age Man page
abs_unabbreviate_states Man page Source code
add_age_partial_sum Source code
add_all_setting Source code
add_fitted_overall Source code
add_gam_predictions Source code
add_intercept Source code
add_intergenerational Man page Source code
add_modelling_features Man page Source code
add_new_class Source code
add_offset Man page Source code
add_population_age_to Man page Source code
add_school_fraction Source code
add_school_probability Source code
add_school_work_participation Man page Source code
add_symmetrical_features Man page Source code
add_work_fraction Source code
add_work_probability Source code
adjust_household_contact_matrix Source code
age Man page Source code
age_breaks Man page Source code
age_breaks.array Man page Source code
age_breaks.conmat_age_matrix Man page Source code
age_breaks.conmat_setting_prediction_matrix Man page Source code
age_breaks.default Man page Source code
age_breaks.matrix Man page Source code
age_breaks.ngm_setting_matrix Man page Source code
age_breaks.numeric Man page Source code
age_breaks.predicted_contacts Man page Source code
age_breaks.setting_contact_model Man page Source code
age_breaks.setting_data Man page Source code
age_breaks.setting_vaccination_matrix Man page Source code
age_breaks.transmission_probability_matrix Man page Source code
age_group_lookup Man page
age_interval Source code
age_label Man page Source code
age_label.conmat_population Man page Source code
age_label.default Man page Source code
age_population Man page Source code
aggregate_predicted_contacts Man page Source code
all_matrix Source code
apply_vaccination Man page Source code
as_conmat_population Man page Source code
as_conmat_population.NULL Source code
as_conmat_population.data.frame Man page Source code
as_conmat_population.default Man page Source code
as_conmat_population.grouped_df Man page
as_conmat_population.list Man page
as_setting_prediction_matrix Man page Source code
as_setting_prediction_matrix.conmat_setting_prediction_matrix Source code
as_setting_prediction_matrix.default Source code
as_setting_prediction_matrix.list Source code
autoplot Man page
autoplot-conmat Man page
autoplot-conmat-partial Man page
autoplot.conmat_age_matrix Man page Source code
autoplot.conmat_setting_prediction_matrix Man page Source code
autoplot.ngm_setting_matrix Man page Source code
autoplot.partial_predictions Man page Source code
autoplot.partial_predictions_sum Man page Source code
autoplot.setting_partial_predictions Man page Source code
autoplot.setting_partial_predictions_sum Man page Source code
autoplot.setting_vaccination_matrix Man page Source code
autoplot.transmission_probability_matrix Man page Source code
bin_widths Source code
build_lookup_populations Source code
calculate_ngm Source code
check_age_breaks Source code
check_dimensions Man page Source code
check_if_all_matrix Source code
check_if_data_frame Source code
check_if_list Man page Source code
check_if_var_numeric Source code
check_lga_name Source code
check_school_demographics Man page Source code
check_state_name Source code
check_transmission_probabilities Source code
check_work_demographics Man page Source code
clean_age_population_year Man page Source code
clean_term_names Source code
conmat Man page
conmat-package Man page
conmat_original_school_demographics Man page
conmat_original_work_demographics Man page
conmat_population Man page Source code
create_age_grid Source code
data_abs_lga_education Man page
data_abs_lga_work Man page
data_abs_state_education Man page
data_abs_state_work Man page
davies_age_extended Man page
error_old_ngm_arg Source code
estimate_setting_contacts Man page Source code
extract_term_name Source code
extract_term_names Source code
extrapolate_polymod Man page Source code
eyre_transmission_probabilities Man page
fit_bounded_age_groups Source code
fit_setting_contacts Man page Source code
fit_single_contact_model Man page Source code
formula-terms Man page
generate_ngm Man page Source code
generate_ngm.conmat_population Man page Source code
generate_ngm.conmat_setting_prediction_matrix Man page Source code
generate_ngm_oz Man page Source code
get_abs_household_size_distribution Man page Source code
get_abs_household_size_population Man page Source code
get_abs_per_capita_household_size Man page Source code
get_abs_per_capita_household_size_lga Man page Source code
get_abs_per_capita_household_size_state Man page Source code
get_age_population_function Man page Source code
get_age_population_function.conmat_population Man page Source code
get_age_population_function.data.frame Man page Source code
get_formulas_terms Man page Source code
get_polymod_contact_data Man page Source code
get_polymod_per_capita_household_size Man page Source code
get_polymod_population Man page Source code
get_polymod_setting_data Man page Source code
get_setting_transmission_matrices Man page Source code
gg_age_partial_pred_long Source code
gg_age_partial_sum Source code
gg_age_partial_sum_setting Source code
gg_age_terms_settings Source code
group_age_breaks Source code
is_equally_spaced Source code
matrix_to_predictions Man page Source code
name_list Source code
named_group_split Source code
new_age_matrix Man page Source code
new_conmat_population Man page Source code
new_contact_model Source code
new_ngm_setting_matrix Man page Source code
new_predicted_contacts Source code
new_setting_contact_model Source code
new_setting_data Man page Source code
new_setting_prediction_matrix Source code
new_setting_vaccination_matrix Source code
new_transmission_probability_matrix Source code
partial-prediction Man page
partial-prediction-sum Man page
partial_effects Man page Source code
partial_effects.contact_model Man page Source code
partial_effects.setting_contact_model Man page Source code
partial_effects_sum Man page Source code
partial_effects_sum.contact_model Man page Source code
partial_effects_sum.setting_contact_model Man page Source code
per_capita_household_size Man page Source code
pivot_longer_age_preds Source code
plot_matrix Source code
plot_setting_matrices Source code
polymod Man page
polymod_setting_models Man page
population Man page Source code
population_label Man page Source code
population_label.conmat_population Man page Source code
population_label.default Man page Source code
predict_contacts Man page Source code
predict_contacts_1y Man page Source code
predict_gam_term Source code
predict_individual_terms Source code
predict_setting_contacts Man page Source code
predict_to_long_age_ranges Source code
predictions_to_matrix Man page Source code
predictions_to_matrix.predicted_contacts Source code
prem_germany_contact_matrices Man page
prepare_list_matrix Source code
prepare_population_for_modelling Man page Source code
prepare_population_for_modelling.conmat_population Man page Source code
prepare_population_for_modelling.data.frame Man page Source code
print.conmat_age_matrix Source code
print.conmat_population Source code
print.conmat_setting_prediction_matrix Source code
print.ngm_setting_matrix Source code
print.setting_contact_model Source code
print.setting_data Source code
print.setting_vaccination_matrix Source code
print.transmission_probability_matrix Source code
print_age_breaks Source code
print_list_dim Source code
print_model_info Source code
print_setting_info Source code
raw_eigenvalue Man page Source code
reexports Man page
remove_inf Source code
repair_list_matrix_names Source code
return_age_population_function Source code
scaling Man page Source code
separate_age_group Man page Source code
set_age_breaks_matrices Source code
set_age_breaks_matrix Source code
setting_prediction_matrix Man page Source code
setting_weights Man page
tidy_predict_term Source code
transmission_probability_matrix Man page Source code
ungroup_age_breaks Source code
vaccination_effect_example_data Man page
validate_conmat_population Source code
njtierney/conmat documentation built on April 17, 2025, 10:27 p.m.