Files in nstrayer/phewasHelper
Helpers For Working With PheWas And PheCode Data
.Rbuildignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/add_phecode_levels.R
R/category_colors.R
R/data_docs.R
R/get_phecode_info.R
R/join_phecode_info.R
R/normalize_phecodes.R
R/rollup_phecode_counts.R
R/rollup_phecode_pairs.R
R/scale_color_phecode.R
R/spare_matrix_to_tidy_df.R
R/theme_phewas.R
R/utils-pipe.R
README.Rmd
README.md
_pkgdown.yml
data-raw/phecode_definitions1.2.csv
data-raw/phecode_descriptions.R
data-raw/phecode_to_levels.R
data/phecode_descriptions.rda
data/phecode_to_levels.rda
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/add_phecode_levels.html
docs/reference/category_colors.html
docs/reference/figures/README-plot-w-category_colors-1.png
docs/reference/figures/README-plot-w-scale_color_phecode-1.png
docs/reference/figures/README-unnamed-chunk-2-1.png
docs/reference/figures/README-unnamed-chunk-3-1.png
docs/reference/figures/README-unnamed-chunk-4-1.png
docs/reference/get_phecode_info.html
docs/reference/index.html
docs/reference/join_phecode_info.html
docs/reference/normalize_phecode.html
docs/reference/normalize_phecodes.html
docs/reference/phecode_descriptions.html
docs/reference/phecode_to_levels.html
docs/reference/pipe.html
docs/reference/rollup_phecode_counts.html
docs/reference/rollup_phecode_pairs.html
docs/reference/rollup_phecodes.html
docs/reference/scale_color_phecode-1.png
docs/reference/scale_color_phecode.html
docs/reference/theme_phewas-1.png
docs/reference/theme_phewas-2.png
docs/reference/theme_phewas.html
man/add_phecode_levels.Rd
man/category_colors.Rd
man/figures/README-plot-w-category_colors-1.png
man/figures/README-plot-w-scale_color_phecode-1.png
man/figures/README-unnamed-chunk-2-1.png
man/figures/README-unnamed-chunk-3-1.png
man/get_phecode_info.Rd
man/join_phecode_info.Rd
man/normalize_phecodes.Rd
man/phecode_descriptions.Rd
man/phecode_to_levels.Rd
man/pipe.Rd
man/rollup_phecode_counts.Rd
man/rollup_phecode_pairs.Rd
man/scale_color_phecode.Rd
man/sparse_matrix_to_tidy.Rd
man/theme_phewas.Rd
phewasHelper.Rproj
tests/manual/benchmark_rollups.R
tests/testthat.R
tests/testthat/test-add_phecode_levels.R
tests/testthat/test-get_phecode_info.R
tests/testthat/test-join_phecode_info.R
tests/testthat/test-normalize_phecodes.R
tests/testthat/test-phecode_rollup.R
