API for nunesijg/rgeap
Gene Expression Analysis Platform (GEAP)
| Global functions | |
|---|---|
| ...arg | Source code |
| .adjust.alloc.size | Source code |
| .aggregate.dtinfo | Source code |
| .aggregate.dtinfo.paste | Source code |
| .buffer.callback | Source code |
| .get.mem.address | Source code |
| .get.valid.args | Source code |
| .give.error | Source code |
| .give.status | Source code |
| .initialize.affy | Source code |
| .initialize.affy.customcdf | Source code |
| .initialize.affy.treatgcrma | Source code |
| .initialize.affy.treatplier | Source code |
| .initialize.agilent | Source code |
| .initialize.bioconductor | Source code |
| .initialize.diffexpr | Source code |
| .initialize.esets | Source code |
| .initialize.genepix | Source code |
| .initialize.geomats | Source code |
| .initialize.go | Source code |
| .initialize.graphics | Source code |
| .initialize.illumina | Source code |
| .initialize.limma | Source code |
| .initialize.matrixdata | Source code |
| .initialize.nanostring | Source code |
| .initialize.oligo | Source code |
| .initialize.probes | Source code |
| .initialize.probes.affy | Source code |
| .initialize.probes.oligo | Source code |
| .initialize.qmetrics | Source code |
| .is.verbose | Source code |
| .isMaySerialize | Source code |
| .isSerializableDfColumn | Source code |
| .occur.duplicates | Source code |
| .occur.index | Source code |
| .occur.index.list | Source code |
| .open.filecon | Source code |
| .order.byref | Source code |
| .parent.assign | Source code |
| .pronom.an | Source code |
| .qmetricsbase | Source code |
| .read.firstline | Source code |
| .read.line.offset | Source code |
| .read.lines.byindex | Source code |
| .regex.matches | Source code |
| .self.oneshot | Source code |
| .sort.byref | Source code |
| .split.multigenes | Source code |
| .write.filecon | Source code |
| `%using%` | Source code |
| adjust.path | Source code |
| all.packages | Source code |
| alloc.call.pointer | Source code |
| call2value | Source code |
| callrun | Source code |
| cdf.makepkg | Source code |
| charVecToRaw | Source code |
| check.file.structure | Source code |
| check.illumina.idat | Source code |
| clean.opened.streams | Source code |
| column.classes | Source code |
| conn.close.all | Source code |
| create.elistraw | Source code |
| create.rglist | Source code |
| df.getcols.bytype | Source code |
| df.to.eset | Source code |
| diffexpr.compare | Source code |
| dispose | Source code |
| dispose.connection | Source code |
| dispose.default | Source code |
| eset.as.df | Source code |
| eset.exprs | Source code |
| eset.extract.matching.platcols | Source code |
| eset.getplatform | Source code |
| eset.has.exprs.vals | Source code |
| eset.hasplatform | Source code |
| eset.insert.platdata | Source code |
| eset.maybelog2transformed | Source code |
| eset.merge.platdata | Source code |
| eset.rm.invalid.values | Source code |
| eset.samplenames | Source code |
| esets.merge | Source code |
| eval.base64 | Source code |
| filter.args.bytype | Source code |
| fixed.call.pointer | Source code |
| fixedRawPtr | Source code |
| gaf2genelist | Source code |
| garbage.collect | Source code |
| get.biocmanager.version | Source code |
| get.geap.option | Source code |
| get.old.pkgs | Source code |
| getAffyPlatformName | Source code |
| getAllInstalledPackages | Source code |
| getAnnProbeNames | Source code |
| getCdfPkgName | Source code |
| getCdfProbeNames | Source code |
| getDirectSubclasses | Source code |
| getLoadedPackages | Source code |
| getMemPtr | Source code |
| getPdProbeNames | Source code |
| go.analysis.custom | Source code |
| go.append.result.genes | Source code |
| gr.plot.raw.png | Source code |
| gr.vector.create | Source code |
| gr.vector.ext | Source code |
| has.packages | Source code |
| hasMinByteSize | Source code |
| head.DifExpResults | Source code |
| head.tail | Source code |
| install.pkgs | Source code |
| internal.ptr | Source code |
| is.api | Source code |
| is.expset | Source code |
| is.multifactor | Source code |
| is.oligo.only.celfile | Source code |
| is.windows | Source code |
| load.session | Source code |
| loadLocalPackage | Source code |
| loaded.packages | Source code |
| loadpkgs | Source code |
| malist.to.eset | Source code |
| mat.colnames | Source code |
| mat.nrow | Source code |
| mat.rownames | Source code |
| max.index | Source code |
| metacall | Source code |
| min.index | Source code |
| multifactor.build | Source code |
| multifactor.build.ifneeded | Source code |
| multifactor.cancoerce | Source code |
| multifactor.rebuild | Source code |
| multifactor.rebuild.base | Source code |
| multifactor.tolist | Source code |
| org2genelist | Source code |
| print.result | Source code |
| printMemInfo | Source code |
| printPtrBytes | Source code |
| qmetrics.analyze | Source code |
| rawPtr | Source code |
| rawToCharVec | Source code |
| read.affxparser.cel.files | Source code |
| read.affy.cel.files | Source code |
| read.agilent | Source code |
| read.agilent.header | Source code |
| read.bin.file2obj | Source code |
| read.bin2buffer | Source code |
| read.cel.header.core | Source code |
| read.cel.headerinfo | Source code |
| read.gaf | Source code |
| read.genepix | Source code |
| read.go.annot.file | Source code |
| read.illumina.bgx | Source code |
| read.illumina.idat | Source code |
| read.illumina.matrices | Source code |
| read.illumina.matrix | Source code |
| read.multisoft.file | Source code |
| read.multisoft.table.binpos | Source code |
| read.nanostring.RCC | Source code |
| read.oligo.cel.files | Source code |
| read.rds.file | Source code |
| read.series.matrices | Source code |
| read.series.matrix | Source code |
| read.soft.data | Source code |
| read.table.atpos | Source code |
| remove.vars | Source code |
| robj.class | Source code |
| robj.exists | Source code |
| robj.inherits | Source code |
| save.rds.file | Source code |
| save.session | Source code |
| set.geap.option | Source code |
| set.geap.options | Source code |
| set.geap.text.language | Source code |
| status.message | Source code |
| status.percent | Source code |
| str.size | Source code |
| substr.multi | Source code |
| summary.results.single | Source code |
| table.summarize.rownames.bycol | Source code |
| to.tempdir | Source code |
| track.matching.lines | Source code |
| track.matching.string.binpos | Source code |
| track.next.line.binpos | Source code |
| treat.affy | Source code |
| treat.illumina.matrix | Source code |
| treat.limma | Source code |
| treat.nanostring | Source code |
| treat.oligo | Source code |
| txtfile.to.eset | Source code |
| unloadAllLoadedPackages | Source code |
| unloadLocalLoadedPackages | Source code |
| unloadPackage | Source code |
| vecmat.getstrarr | Source code |
| vecmat.has.NA | Source code |
| vecmat.has.infinite | Source code |
| vecmat.has.zeroes | Source code |
| write.matrix | Source code |
| write.serialelem | Source code |
| xalloc.character | Source code |
| xalloc.character.matrix | Source code |
| xalloc.matrix | Source code |
| xserialize | Source code |
