Man pages for nwfsc-timeseries/MARSS
Multivariate Autoregressive State-Space Modeling
| accuracy_marssMLE | Return accuracy metrics |
| allowed | MARSS Function Defaults and Allowed Methods |
| as_marssMODEL | Convert Model Objects between Forms |
| checkMARSSInputs | Check inputs to MARSS call |
| checkModelList | Check model List Passed into MARSS Call |
| coef_marssMLE | Coefficient function for MARSS MLE objects |
| CSEGriskfigure | Plot Extinction Risk Metrics |
| CSEGtmufigure | Plot Forecast Uncertainty |
| datasets | Example Data Sets |
| describe_marssMODEL | Describe a marssMODEL Objects |
| fitted_marssMLE | Return fitted values for X(t) and Y(t) in a MARSS model |
| forecast_marssMLE | forecast function for marssMLE objects |
| glance_marssMLE | Return brief summary information on a MARSS fit |
| graywhales | Population Data Sets |
| harborSeal | Harbor Seal Population Count Data (Log counts) |
| isleRoyal | Isle Royale Wolf and Moose Data |
| is_marssMLE | Tests marssMLE object for completeness |
| is_marssMODEL | Test Model Objects |
| ldiag | Return a diagonal list matrix |
| loggerhead | Loggerhead Turtle Tracking Data |
| logLik_marssMLE | logLik method for MARSS MLE objects |
| MARSS | Fit a MARSS Model via Maximum-Likelihood Estimation |
| MARSSaic | AIC for MARSS Models |
| MARSSapplynames | Names for marssMLE Object Components |
| MARSSboot | Bootstrap MARSS Parameter Estimates |
| MARSScv | MARSScv is a wrapper for MARSS that re-fits the model with... |
| MARSS_dfa | Multivariate Dynamic Factor Analysis |
| MARSSFisherI | Observed Fisher Information Matrix at the MLE |
| MARSSfit | Generic for fitting MARSS models |
| MARSSharveyobsFI | Hessian Matrix via the Harvey (1989) Recursion |
| MARSShatyt | Compute Expected Value of Y, YY, and YX |
| MARSShessian | Parameter Variance-Covariance Matrix from the Hessian Matrix |
| MARSShessian_numerical | Hessian Matrix via Numerical Approximation |
| MARSSinfo | MARSS Error Messages and Warnings |
| MARSSinits | Initial Values for MLE |
| MARSSinnovationsboot | Bootstrapped Data using Stoffer and Wall's Algorithm |
| MARSSkem | EM Algorithm function for MARSS models |
| MARSSkemcheck | Model Checking for MLE objects Passed to MARSSkem |
| MARSSkf | Kalman Filtering and Smoothing |
| MARSS_marss | Multivariate AR-1 State-space Model |
| MARSS_marxss | Multivariate AR-1 State-space Model with Inputs |
| marssMLE-class | Class "marssMLE" |
| marssMODEL-class | Class "marssMODEL" |
| MARSSoptim | Parameter estimation for MARSS models using optim |
| MARSS-package | Multivariate Autoregressive State-Space Model Estimation |
| MARSSparamCIs | Standard Errors, Confidence Intervals and Bias for MARSS... |
| marssPredict-class | Class "marssPredict" |
| MARSSresiduals | MARSS Residuals |
| marssResiduals-class | Class "marssResiduals" |
| MARSSresiduals_tT | MARSS Smoothed Residuals |
| MARSSresiduals_tt1 | MARSS One-Step-Ahead Residuals |
| MARSSresiduals_ttt | MARSS Contemporaneous Residuals |
| MARSSsimulate | Simulate Data from a MARSS Model |
| MARSS_vectorized | Vectorized Multivariate AR-1 State-space Model |
| MARSSvectorizeparam | Vectorize or Replace the par List |
| match_arg_exact | match.arg with exact matching |
| model_frame_marssMODEL | model.frame method for marssMLE and marssMODEL objects |
| plankton | Plankton Data Sets |
| plot_marssMLE | Plot MARSS MLE objects |
| plot_marssPredict | Plot MARSS Forecast and Predict objects |
| plot_marssResiduals | Plot MARSS marssResiduals objects |
| predict_help | predict and forecast MARSS MLE objects |
| predict_marssMLE | predict and forecast MARSS MLE objects |
| print_marssMLE | Printing functions for MARSS MLE objects |
| print_marssMODEL | Printing marssMODEL Objects |
| print_marssPredict | Printing function for MARSS Predict objects |
| residuals_marssMLE | Model and state fitted values, residuals, and residual sigma |
| SalmonSurvCUI | Salmon Survival Indices |
| stdInnov | Standardized Innovations |
| summary_marssMLE | Summary methods for marssMLE objects |
| sysdata | Palettes |
| tidy_marssMLE | Return estimated parameters with summary information |
| toLatex_marssMLE | Create a LaTeX Version of the Model |
| tsSmooth_marssMLE | Smoothed and filtered x and y time series |
| utility_functions | Utility Functions |
| zscore | z-score a vector or matrix |
