Man pages for obrady/SpatialDengue
Fits and simulates a spatial model of the vector-borne disease dengue
| betaEnv.generate | Generating a baseline landscape of vector-human and... |
| case.backtrack.time | Establishing model initial conditions |
| Cdeath.MN.func | Nested mosquito death sampler (due to vector control) |
| DEN.spatial | Run a single realisation of the spatial dengue model |
| DEN.spatial.ensemble | Run a multiple realisations of the spatial dengue model and... |
| DEN.spatial.RCT | Simulate a randomised control trial of dengue prophylactic... |
| DEN.spatial.seasonal | Run a single realisation of the spatial dengue model |
| DEN.spatial.UCT | Simulate an urban cluster trial of dengue prophylactic drugs |
| EIP.MN.func | Nested EIP completion sampler |
| finalWeights | Posterior distribution of fitted model parameters |
| find.Dspots | Find detected spots |
| Hum.Drug.Treat.MN | Nested Human drug treatment sampler |
| hum.inf.prob | Calculate probability of human infection |
| make.eval.set | Creating an evaluation dataset for fitting |
| make.unipix | Create a universal lookup table from a population raster |
| model.run | Run a model simulation (workhorse function) |
| mos.inf.prob | Calculate probability of mosquito infection |
| mosq | Adult mosquito capture data for Singapore |
| move.matrix.gene | Creating a movement matrix |
| multinom | Multinomial state transition sampler |
| natdeath.MN.func | Nested mosquito death sampler |
| pix.id.find | Match Longitude and Latitude of clusters to pixel IDs in grid |
| plot.state | Plots a map of a given model compartment state |
| pop.process | Population processing |
| rad.model | Radiation model |
| Sample.size.calc | Updating sample size calculations for trial design |
| sero | Seroprevalence of dengue in Singapore |
| sero1kmvec | Proportion immune in Singapore in vector format |
| sgdat | Reported dengue cases in Singapore 2013-2016 |
| sgpop | Population of Singapore in raster format |
| sgpop1kmvec | Population of Singapore in vector format |
| stim.generate | Generating a baseline landscape of susceptible individuals |
| transition | Matrix time transition function |
| UCT.Eff.calc | Summarises the results from multiple simulations of a UCT |
| unipix | A universal lookup table for pixels and patches in the focus... |
