Files in ocean-tracking-network/glatos
A package for the Great Lakes Acoustic Telemetry Observation System
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/document.yaml
.github/workflows/pr-commands.yaml
.github/workflows/style.yaml
.gitignore
CONTRIBUTING.md
DESCRIPTION
Meta/vignette.rds
NAMESPACE
NEWS.md
R/class-glatos_animals.r
R/class-glatos_detections.r
R/class-glatos_receivers.r
R/class-glatos_workbook.r
R/data.r
R/extdata.r
R/filt-false_detections.r
R/load-prepare_deploy_sheet.R
R/load-prepare_tag_sheet.R
R/load-read_glatos_detections.r
R/load-read_glatos_receivers.r
R/load-read_glatos_workbook.r
R/load-read_otn_deployments.R
R/load-read_otn_detections.r
R/load-read_vdat_csv.r
R/load-read_vemco_tag_specs.r
R/load-read_vue_detection_csv.r
R/load-read_vue_event_csv.r
R/load-write_vdat_csv.r
R/package-glatos-defunct.r
R/package-glatos-deprecated.r
R/package-glatos.r
R/proc-min_lag.r
R/proc-real_sensor_values.r
R/sim-calc_collision_prob.r
R/sim-crw_in_polygon.r
R/sim-detect_transmissions.r
R/sim-receiver_line_det_sim.r
R/sim-transmit_along_path.r
R/simutil-crw.r
R/simutil-rotate_points.r
R/simutil-vector_heading.r
R/summ-detection_events.r
R/summ-detection_range_model.r
R/summ-receiver_efficiency.r
R/summ-residence_index.r
R/summ-summarize_detections.r
R/sysdata.rda
R/testdata.r
R/util-check_dependencies.r
R/util-convert_glatos_to_att.r
R/util-convert_otn_erddap_to_att.r
R/util-convert_otn_to_att.r
R/util-install_ffmpeg.r
R/util-intern_pkg_man.r
R/util-kml_to_csv.r
R/util-point_offset.r
R/util-vdat.r
R/util-vrl2csv.r
R/util-vue.r
R/vis-abacus_plot.r
R/vis-adjust_playback_time.r
R/vis-detection_bubble_plot.r
R/vis-interpolate_path.r
R/vis-kml_workbook.r
R/vis-make_frames.r
R/vis-make_transition.r
R/vis-make_video.r
R/vis-position_heat_map.r
ReadMe.md
data-raw/data-greatLakesTrLayer.r
data-raw/data-great_lakes_polygon.r
data-raw/data-vdat_csv_schema.r
data-raw/intdata-blue_shark_att.r
data-raw/intdata-blue_shark_detections.r
data-raw/intdata-blue_shark_erddap_att.r
data-raw/intdata-glatos_detection_schema.r
data-raw/intdata-glatos_receivers_schema.r
data-raw/intdata-glatos_workbook_schema.r
data-raw/intdata-hfx_deployments.r
data-raw/intdata-lamprey_detections.r
data-raw/intdata-lamprey_tag_specs.r
data-raw/intdata-otn_deployments_schema.r
data-raw/intdata-otn_detection_schema.r
data-raw/intdata-sample_detection_efficiency.r
data-raw/intdata-sample_receivers.r
data-raw/intdata-sample_receivers2.r
data-raw/intdata-vemco_tag_spec_schema.r
data-raw/intdata-walleye_att.r
data-raw/intdata-walleye_detections.r
data-raw/intdata-walleye_workbook.r
data/flynn_island_polygon.rda
data/greatLakesPoly.rda
data/greatLakesTrLayer.rda
data/great_lakes_polygon.rda
data/higgins_lake_polygon.rda
data/lamprey_tracks.rda
data/range_detection.rda
data/sample_detection_efficiency.rda
data/vdat_csv_schema.rda
inst/extdata/VR2W_109924_20110718_1.csv
inst/extdata/VR2W_receiverEvents_109924_20110718_1.csv
inst/extdata/blue_shark_detections.csv
inst/extdata/detection_files_raw/HR2-180_461396_2021-04-20_173145.vdat
inst/extdata/detection_files_raw/VR2AR_546310_20190613_1.vrl
inst/extdata/detection_files_raw/VR2Tx_480022_20190613_1.vrl
inst/extdata/detection_files_raw/VR2W180_302187_20180629_1.vrl
inst/extdata/detection_files_raw/VR2W_106324_20120731_1.vrl
inst/extdata/detection_files_raw/VR2W_109924_20110718_1.vrl
inst/extdata/example_polygons.kml
inst/extdata/frames/01.png
inst/extdata/frames/02.png
inst/extdata/frames/03.png
inst/extdata/frames/04.png
inst/extdata/frames/05.png
inst/extdata/frames/06.png
inst/extdata/frames/07.png
inst/extdata/frames/08.png
inst/extdata/frames/09.png
inst/extdata/frames/10.png
inst/extdata/frames/11.png
inst/extdata/frames/12.png
inst/extdata/frames/13.png
inst/extdata/frames/14.png
inst/extdata/frames/15.png
inst/extdata/frames/16.png
inst/extdata/frames/17.png
inst/extdata/frames/18.png
inst/extdata/frames/19.png
inst/extdata/frames/20.png
inst/extdata/frames/21.png
inst/extdata/frames/22.png
inst/extdata/frames/23.png
inst/extdata/frames/24.png
inst/extdata/frames/25.png
inst/extdata/frames/26.png
inst/extdata/frames/27.png
inst/extdata/frames/28.png
inst/extdata/frames/29.png
inst/extdata/frames/30.png
inst/extdata/hfx_deploy_simplified.xlsx
inst/extdata/hfx_deployments.csv
inst/extdata/hfx_detections.csv
inst/extdata/lamprey_detections.csv
inst/extdata/lamprey_tag_specs.xls
inst/extdata/otn_aat_animals.csv
inst/extdata/otn_aat_receivers.csv
inst/extdata/otn_aat_tag_releases.csv
inst/extdata/otn_nsbs_tag_metadata.xls
inst/extdata/sample_receivers.csv
inst/extdata/sample_receivers2.csv
inst/extdata/shoreline.zip
inst/extdata/walleye_detections.csv
inst/extdata/walleye_detections2.csv
inst/extdata/walleye_workbook.xlsm
inst/supplemental_docs/detection_range_handout.Rmd
inst/supplemental_docs/receiver_efficiency_index_handout.Rmd
inst/supplemental_docs/render_supplemental_docs.R
inst/supplemental_docs/residence_index_handout.Rmd
inst/testdata/flynn_island_transition.rds
inst/testdata/higgins_lake_transition.rds
inst/testdata/test-crw_in_polygon-path_dfin_spout.rds
inst/testdata/test-crw_in_polygon-path_spin_spout.rds
inst/testdata/test-detect_transmissions-dtc_dfout.rds
inst/testdata/test-detect_transmissions-dtc_spout.rds
inst/testdata/test-transmit_along_path-tr_dfin_spout.rds
inst/testdata/test-transmit_along_path-tr_spin_spout.rds
inst/testdata/testdata-workbook_001.xlsm
man/REI.Rd
man/abacus_plot.Rd
man/adjust_playback_time.Rd
man/aggregate_total_no_overlap.Rd
man/aggregate_total_with_overlap.Rd
man/calc_collision_prob.Rd
man/check_vdat.Rd
man/check_vue.Rd
man/convert_glatos_to_att.Rd
man/convert_otn_erddap_to_att.Rd
man/convert_otn_to_att.Rd
man/crw.Rd
man/crw_in_polygon.Rd
man/detect_transmissions.Rd
man/detection_bubble_plot.Rd
man/detection_events.Rd
man/detection_range_model.Rd
man/false_detections.Rd
man/flynn_island_polygon.Rd
man/flynn_island_transition.Rd
man/format_POSIXt.Rd
man/get_days.Rd
man/get_local_vdat_template.Rd
man/get_local_vdat_version.Rd
man/get_local_vue_version.Rd
man/glatos-defunct.Rd
man/glatos-deprecated.Rd
man/glatos.Rd
man/glatos_animals.Rd
man/glatos_check_col_names.Rd
man/glatos_detections.Rd
man/glatos_receivers.Rd
man/glatos_workbook.Rd
man/greatLakesPoly.Rd
man/greatLakesTrLayer.Rd
man/great_lakes_polygon.Rd
man/higgins_lake_polygon.Rd
man/higgins_lake_transition.Rd
man/interpolate_path.Rd
man/interval_count.Rd
man/jarasterize.Rd
man/kml_to_csv.Rd
man/kml_workbook.Rd
man/lamprey_tracks.Rd
man/make_frames.Rd
man/make_transition.Rd
man/make_video.Rd
man/min_lag.Rd
man/otn_aat_animals.Rd
man/otn_aat_receivers.Rd
man/otn_aat_tag_releases.Rd
man/point_offset.Rd
man/position_heat_map.Rd
man/prepare_deploy_sheet.Rd
man/prepare_tag_sheet.Rd
man/range_detection.Rd
man/raw_lamprey_workbook.Rd
man/raw_walleye_detections.Rd
man/read_glatos_detections.Rd
man/read_glatos_receivers.Rd
man/read_glatos_workbook.Rd
man/read_otn_deployments.Rd
man/read_otn_detections.Rd
man/read_vdat_csv.Rd
man/read_vemco_tag_specs.Rd
man/read_vue_detection_csv.Rd
man/read_vue_event_csv.Rd
man/real_sensor_values.Rd
man/receiver_line_det_sim.Rd
man/residence_index.Rd
man/rotate_points.Rd
man/sample_detection_efficiency.Rd
man/scale_meters_to_degrees.Rd
man/shoreline.Rd
man/sub-.vdat_list.Rd
man/summarize_detections.Rd
man/total_diff_days.Rd
man/transmit_along_path.Rd
man/vdat_convert.Rd
man/vdat_csv_schema.Rd
man/vector_heading.Rd
man/video-images.Rd
man/vrl2csv-deprecated.Rd
man/vue_convert.Rd
man/write_vdat_csv.Rd
tests/testthat.r
tests/testthat/_snaps/abacus_plot/basic-functionality.svg
tests/testthat/_snaps/abacus_plot/custom-locations-xaxis.svg
tests/testthat/_snaps/abacus_plot/reciver-history.svg
tests/testthat/_snaps/crw_in_polygon.md
tests/testthat/_snaps/detect_transmissions.md
tests/testthat/_snaps/detection_bubble_plot/dbp-basic-functionality.svg
tests/testthat/_snaps/false_detections.md
tests/testthat/_snaps/interpolate_path.md
tests/testthat/_snaps/kml_to_csv.md
tests/testthat/_snaps/kml_workbook.md
tests/testthat/_snaps/make_transition.md
tests/testthat/_snaps/read_vdat_csv.md
tests/testthat/_snaps/read_vue_detection_csv.md
tests/testthat/_snaps/read_vue_event_csv.md
tests/testthat/_snaps/real_sensor_values.md
tests/testthat/_snaps/receiver_line_det_sim/four-fish-sim.svg
tests/testthat/_snaps/receiver_line_det_sim/ten-fish-sim.svg
tests/testthat/_snaps/summarize_detections.md
tests/testthat/_snaps/transmit_along_path.md
tests/testthat/_snaps/vdat_convert.md
tests/testthat/_snaps/vrl2csv.md
tests/testthat/_snaps/vue_convert.md
tests/testthat/helper-make-test-data.R
tests/testthat/test-abacus_plot.R
tests/testthat/test-adjust_playback_time.r
tests/testthat/test-calc_collision_prob.R
tests/testthat/test-convert_glatos_to_att.r
tests/testthat/test-convert_life_to_days.R
tests/testthat/test-convert_otn_erddap_to_att.r
tests/testthat/test-convert_otn_to_att.r
tests/testthat/test-convert_sex.R
tests/testthat/test-crw_in_polygon.r
tests/testthat/test-detect_transmissions.r
tests/testthat/test-detection_bubble_plot.R
tests/testthat/test-detection_range_model.r
tests/testthat/test-extract_station.R
tests/testthat/test-false_detections.r
tests/testthat/test-get_codemap.R
tests/testthat/test-glatos_animals.R
tests/testthat/test-glatos_detections.R
tests/testthat/test-glatos_receivers.R
tests/testthat/test-interpolate_path.R
tests/testthat/test-kml_to_csv.R
tests/testthat/test-kml_workbook.R
tests/testthat/test-make_frames.r
tests/testthat/test-make_transition.r
tests/testthat/test-make_video.r
tests/testthat/test-min_lag.r
tests/testthat/test-point_offset.R
tests/testthat/test-position_heat_map.r
tests/testthat/test-prepare_tag_sheet.R
tests/testthat/test-query_worms_common.R
tests/testthat/test-read_glatos_detections.r
tests/testthat/test-read_glatos_receivers.r
tests/testthat/test-read_glatos_workbook.r
tests/testthat/test-read_otn_deployments.r
tests/testthat/test-read_otn_detections.r
tests/testthat/test-read_vdat_csv.R
tests/testthat/test-read_vemco_tag_specs.r
tests/testthat/test-read_vue_detection_csv.R
tests/testthat/test-read_vue_event_csv.R
tests/testthat/test-real_sensor_values.R
tests/testthat/test-receiver_efficiency.R
tests/testthat/test-receiver_line_det_sim.R
tests/testthat/test-residence_index.r
tests/testthat/test-rotate_points.R
tests/testthat/test-summarize_detections.R
tests/testthat/test-transmit_along_path.r
tests/testthat/test-vdat_convert.R
tests/testthat/test-vector_heading.R
tests/testthat/test-vrl2csv.r
tests/testthat/test-vue_convert.r
tests/testthat/test-write_vdat_csv.R
tests/testthat/testdata/transmit_along_path-tr_dfin_spout.rds
vignettes/.install_extras
vignettes/data_loading_vignette.R
vignettes/data_loading_vignette.Rmd
vignettes/data_loading_vignette.html
vignettes/data_requirements_vignette.Rmd
vignettes/data_requirements_vignette.html
vignettes/detection_efficiency_vignette.R
vignettes/detection_efficiency_vignette.Rmd
vignettes/detection_efficiency_vignette.html
vignettes/detection_range_handout.html
vignettes/detection_range_handout.pdf
vignettes/receiver_efficiency_index_handout.html
vignettes/receiver_efficiency_index_handout.pdf
vignettes/residence_index_handout.html
vignettes/residence_index_handout.pdf
vignettes/supplemental_docs.Rmd
vignettes/supplemental_docs.html
