Man pages for ocean-tracking-network/glatos
A package for the Great Lakes Acoustic Telemetry Observation System

abacus_plotPlot detection locations of acoustic transmitters over time
adjust_playback_timeModify playback time of video
aggregate_total_no_overlapThe function below aggregates timedelta of first_detection...
aggregate_total_with_overlapThe function below aggregates timedelta of first_detection...
calc_collision_probEstimate probability of collision for telemetry transmitters
check_vdatCheck path to Innovasea program VDAT.exe
check_vueCheck path to Innovasea program VUE.exe
convert_glatos_to_attConvert detections and receiver metadata to a format that ATT...
convert_otn_erddap_to_attConvert detections, transmitter, receiver, and animal...
convert_otn_to_attConvert detections, tagging metadata, and deployment metadata...
crwSimulate a correlated random walk
crw_in_polygonSimulate a correlated random walk inside a polygon
detection_bubble_plotMake bubble plots showing the number of fish detected across...
detection_eventsClassify discrete events in detection data
detection_range_modelDetection Range Probability Model
detect_transmissionsSimulate detection of transmitter signals in a receiver...
false_detectionsFalse detection filter
flynn_island_polygonAn sf POLYGON object with coastline of Flynn Island
flynn_island_transitionA transition object for Flynn Island for testing...
format_POSIXtRound timestamp by fractional second and coerce to character
get_daysDetermines which calculation method to use for the residency...
get_local_vdat_templateGet schema from local installation of Innovasea program...
get_local_vdat_versionGet version of local installation of Innovasea program...
get_local_vue_versionGet version of local installation of Innovasea program...
glatosglatos: An R package for the Great Lakes Acoustic Telemetry...
glatos_animalsConstruct, check, and validate a glatos_animals object
glatos_check_col_namesCheck column names and classes of a list or data.frame...
glatos-defunctDefunct functions in glatos
glatos-deprecatedDeprecated functions in package 'glatos'.
glatos_detectionsConstruct, check, and validate a glatos_detections object
glatos_receiversConstruct, check, and validate a glatos_receivers object
glatos_workbookConstructor function for the class glatos_workbook
greatLakesPolyDeprecated A SpatialPolygonDataFrame with Great Lakes...
great_lakes_polygonAn sf POLYGON object with Great Lakes coastline
greatLakesTrLayerA 'TransitionLayer' of the Great Lakes that only prevents...
higgins_lake_polygonAn sf POLYGON object with coastline of Higgins Lake
higgins_lake_transitionA transition object for Higgins Lake for testing...
interpolate_pathInterpolate new positions within a spatiotemporal path data
interval_countThe function below takes a detection events data frame and...
jarasterizeJust another rasterizer
kml_to_csvKML To CSV Conversion
kml_workbookMake a KML or KMZ file of receiver and animal release...
lamprey_tracksSea Lamprey positions from Lake George, St. Marys River, 2012
make_framesCreate an animated video of spatiotemporal path data
make_transitionCreate transition layer from spatial object.
make_videoCreate video from sequence of still images
min_lagCalculate 'min_lag' for identifying potential false positive...
otn_aat_animalsExample animal data from the OTN ERDDAP
otn_aat_receiversExample station data from the OTN ERDDAP
otn_aat_tag_releasesExample tag release data from the OTN ERDDAP
point_offsetIdentify new location based on distance and bearing from...
position_heat_mapPosition Heat Maps
prepare_deploy_sheetLoads the OTN receiver deployment metadata sheet to prepare...
prepare_tag_sheetLoads the OTN tagging metadata sheet to prepare it for use in...
range_detectionDetection range data set
raw_lamprey_workbookRaw GLATOS Workbook from St. Marys River Sea Lamprey project
raw_walleye_detectionsZipped GLATOS detection file from Huron Erie Corridor Walleye...
read_glatos_detectionsRead data from a GLATOS detection file
read_glatos_receiversRead data from a GLATOS receiver location file
read_glatos_workbookRead data from a GLATOS project workbook
read_otn_deploymentsRead data from a OTN deployment file
read_otn_detectionsRead data from a OTN detection file
read_vdat_csvRead data from an Innovasea Fathom VDAT CSV file
read_vemco_tag_specsRead telemetry transmitter (tag) specification data from a...
read_vue_detection_csvRead detection data exported from Innovasea VUE software
read_vue_event_csvRead receiver event data exported from Innovasea VUE software
real_sensor_valuesAdd 'real'-scale sensor values to glatos detetections
receiver_line_det_simSimulate detection of acoustic-tagged fish crossing a...
REICalculates a returns a list of each station and the REI...
residence_indexGenerate the residence index from a set of detections
rotate_pointsRotate points in a 2-d plane
sample_detection_efficiencyDetection Efficiency data set
scale_meters_to_degreesGet degree-scale equivalent of meter-scale distance on a...
shorelinezipped polygon shapefile of Great Lakes
sub-.vdat_listSubset method for vdat_list that retains attributes
summarize_detectionsSummarize detections by animal, location, or both
total_diff_daysThe function below determines the total days difference.
transmit_along_pathSimulate telemetry transmitter signals along a path
vdat_convertConvert an Innovasea VRL or VDAT file to a Fathom CSV file
vdat_csv_schemaA schema for Innovasea Fathom (VDAT) CSV files
vector_headingCalculate direction (heading) of a vector (in degrees)
video-imagesVideo frames of walleye movements in Lake Huron
vrl2csv-deprecatedConvert Vemco VRL file(s) to CSV format (detection data only)
vue_convertConvert an Innovasea Vemco VRL file to a VUE CSV file
write_vdat_csvWrite a vdat_list object to disk in Innovasea Fathom VDAT CSV...
ocean-tracking-network/glatos documentation built on April 17, 2025, 10:38 p.m.