Files in ocelhay/ACORN

App for the exploration of ACORN data

ACORN Installation R Scripts/1_ACORN_Installation.R ACORN Installation R Scripts/2_ACORN_RProfile.R R/runACORN.R R/run_app_standalone.R README.md docs/README.md inst/ACORN-app/app.R inst/ACORN-app/www/R/data_generation/01_read_acorn_data.R inst/ACORN-app/www/R/data_generation/02_map_variables.R inst/ACORN-app/www/R/data_generation/03_map_specimens.R inst/ACORN-app/www/R/data_generation/04_map_organisms.R inst/ACORN-app/www/R/data_generation/05_make_ast_group.R inst/ACORN-app/www/R/data_generation/06_ast_interpretation.R inst/ACORN-app/www/R/data_generation/07_ast_interpretation_nonstandard.R inst/ACORN-app/www/R/data_generation/08_odk_assembly.R inst/ACORN-app/www/R/data_generation/09_link_clinical_assembly.R inst/ACORN-app/www/R/data_generation/10_process_hai_survey_data.R inst/ACORN-app/www/R/data_generation/11_prepare_data.R inst/ACORN-app/www/R/data_generation/12_quality_control.R inst/ACORN-app/www/R/fun/fun_filter_data.R inst/ACORN-app/www/R/fun/fun_highchart_sir.R inst/ACORN-app/www/R/fun/fun_highchart_sir_evolution.R inst/ACORN-app/www/R/output/across_hospital_logo.R inst/ACORN-app/www/R/output/across_multiple_feedback_filters.R inst/ACORN-app/www/R/output/across_timeline_enrollment.R inst/ACORN-app/www/R/output/amr_sir.R inst/ACORN-app/www/R/output/followup_clinical_outcome_status.R inst/ACORN-app/www/R/output/followup_outcome_clinical_diag.R inst/ACORN-app/www/R/output/followup_outcome_d28.R inst/ACORN-app/www/R/output/hai_bed_occupancy_ward.R inst/ACORN-app/www/R/output/hai_rate_ward.R inst/ACORN-app/www/R/output/microbio_counts.R inst/ACORN-app/www/R/output/microbio_organisms.R inst/ACORN-app/www/R/output/microbio_specimens_type.R inst/ACORN-app/www/R/output/overview_counts.R inst/ACORN-app/www/R/output/overview_evolution_blood_culture.R inst/ACORN-app/www/R/output/overview_table.R inst/ACORN-app/www/R/output/profile_age.R inst/ACORN-app/www/R/output/profile_antibiotics.R inst/ACORN-app/www/R/output/profile_blood.R inst/ACORN-app/www/R/output/profile_blood_culture.R inst/ACORN-app/www/R/output/profile_comorbidities.R inst/ACORN-app/www/R/output/profile_date_enrollment.R inst/ACORN-app/www/R/output/profile_diagnosis.R inst/ACORN-app/www/R/output/profile_sex.R inst/ACORN-app/www/R/output/profile_transfer.R inst/ACORN-app/www/R/output/profile_type_ward.R inst/ACORN-app/www/R/output/welcome_feedback_data_generation.R inst/ACORN-app/www/R/output/welcome_online_offline.R inst/ACORN-app/www/R/source_app_launch.R inst/ACORN-app/www/R/source_provide_data.R inst/ACORN-app/www/R/ui/across_pushbar_filters.R inst/ACORN-app/www/R/ui/welcome_pushbar_generate.R inst/ACORN-app/www/markdown/faq_1.md inst/ACORN-app/www/markdown/faq_2.md inst/ACORN-app/www/markdown/faq_4.md inst/ACORN-app/www/markdown/faq_contact.md inst/ACORN-app/www/markdown/help_app_offline.md inst/ACORN-app/www/markdown/help_combine_SI.md inst/ACORN-app/www/markdown/help_deduplication.md inst/ACORN-app/www/markdown/help_upload_data.md inst/ACORN-app/www/markdown/md_credits.md inst/ACORN-app/www/report/report.Rmd man/runACORN.Rd man/run_app_standalone.Rd