Files in ohdsi-studies/CoverAge
A Package Skeleton for Patient Level Prediction Studies

.Rbuildignore

.Rprofile

.gitignore

DESCRIPTION

HydraConfig.json

NAMESPACE

R/CreateAllCohorts.R R/CreateCohorts.R R/Main.R R/PackageResults.R R/SubmitResults.R R/coverAge.R R/createDocument.R R/createPlpProtocol.R R/createValidationPackage.R R/populateShinyApp.R R/readJson.R README.md

coverAge.Rproj

extras/CodeToRun.R extras/CreatePredictionAnalysisDetails.R extras/PLP_protocol_young_2020_09_23.pdf extras/PackageMaintenance.R extras/packageDeps.R

inst/cohorts/COVER_AGE_O_Inpatient_or_ER_visit.json

inst/cohorts/COVER_AGE_O_Inpatient_or_ER_visit_with_no_delivery.json

inst/cohorts/COVID19_ID28_v1_persons_who_die.json

inst/cohorts/COVID_PLP_training__Persons_with_COVID_without_inpatient_or_intensive_services_365d_prior_observation_and_50yo.json

inst/cohorts/COVID_PLP_training_v2__Persons_with_COVID_without_inpatient_or_intensive_services_365d_prior_observation_and_50yo.json

inst/cohorts/COVID_PLP_training_v3__Persons_with_COVID_without_inpatient_or_intensive_services_365d_prior_observation_and_30yo.json

inst/cohorts/COVID_PLP_training_v4__Persons_with_COVID_without_inpatient_or_intensive_services_365d_prior_observation_and_18_and_50yo.json

inst/cohorts/COVID_PLP_training_v5__Persons_with_COVID_without_inpatient_or_intensive_services_365d_prior_observation_and_18.json

inst/cohorts/COVID_PLP_training_v6__Persons_with_COVID_without_inpatient_or_intensive_services_365d_prior_observation_and_18_female_only.json

inst/cohorts/COVID_PLP_training_v7__Persons_with_COVID_without_inpatient_or_intensive_services_365d_prior_observation_between_18y_and_50y_female_only.json

inst/doc/UsingSkeletonPackage.pdf

inst/doc/UsingSkeletonPackage.tex

inst/settings/CohortsToCreate.csv

inst/settings/predictionAnalysisList.json

inst/shiny/PLPViewer/PLPViewer.Rproj

inst/shiny/PLPViewer/global.R inst/shiny/PLPViewer/plots.R inst/shiny/PLPViewer/server.R inst/shiny/PLPViewer/ui.R inst/shiny/PLPViewer/utils.R

inst/shiny/PLPViewer/www/about.png

inst/shiny/PLPViewer/www/custom.css

inst/shiny/PLPViewer/www/favicon.ico

inst/shiny/PLPViewer/www/logo.png

inst/sql/sql_server/COVER_AGE_O_Inpatient_or_ER_visit.sql

inst/sql/sql_server/COVER_AGE_O_Inpatient_or_ER_visit_with_no_delivery.sql

inst/sql/sql_server/COVID19_ID28_v1_persons_who_die.sql

inst/sql/sql_server/COVID_PLP_training__Persons_with_COVID_without_inpatient_or_intensive_services_365d_prior_observation_and_50yo.sql

inst/sql/sql_server/COVID_PLP_training_v2__Persons_with_COVID_without_inpatient_or_intensive_services_365d_prior_observation_and_50yo.sql

inst/sql/sql_server/COVID_PLP_training_v3__Persons_with_COVID_without_inpatient_or_intensive_services_365d_prior_observation_and_30yo.sql

inst/sql/sql_server/COVID_PLP_training_v4__Persons_with_COVID_without_inpatient_or_intensive_services_365d_prior_observation_and_18_and_50yo.sql

inst/sql/sql_server/COVID_PLP_training_v5__Persons_with_COVID_without_inpatient_or_intensive_services_365d_prior_observation_and_18.sql

inst/sql/sql_server/COVID_PLP_training_v6__Persons_with_COVID_without_inpatient_or_intensive_services_365d_prior_observation_and_18_female_only.sql

inst/sql/sql_server/COVID_PLP_training_v7__Persons_with_COVID_without_inpatient_or_intensive_services_365d_prior_observation_between_18y_and_50y_female_only.sql

inst/sql/sql_server/CreateCohortTable.sql

inst/sql/sql_server/GetCounts.sql