Files in ohdsi-studies/Covid19CharacterizationCharybdis
Characterizing Health Associated Risks, and Your Baseline Disease In SARS-COV-2 (CHARYBDIS)
.Rbuildignore
.Rprofile
.gitignore
Covid19CharacterizationCharybdis.Rproj
DESCRIPTION
LICENSE
NAMESPACE
R/CohortCharacterization.R
R/CohortConstruction.R
R/CohortDiagnostics.R
R/Covid19CharacterizationCharybdis.R
R/FeatureConstruction.R
R/Incremental.R
R/Logging.R
R/ResourceFiles.R
R/RunStudy.R
R/Sharing.R
R/Shiny.R
R/StrataConstruction.R
README.md
documents/CharybdisPhenotypeLibrary.csv
documents/Protocol_COVID-19 Charybdis Characterisation_V5.docx
documents/Protocol_Charybdis_050820.pptx
extras/CodeToRun.R
extras/Download-cohorts-from-WebAPI.R
extras/ExcludeResultsExample.R
extras/PackageMaintenance.R
extras/RunShiny.R
extras/renv_setup.R
inst/cohorts/100.json
inst/cohorts/101.json
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inst/settings/BulkStrata.csv
inst/settings/CohortGroups.csv
inst/settings/CohortGroupsDiagnostics.csv
inst/settings/CohortsToCreateCovid.csv
inst/settings/CohortsToCreateFeature.csv
inst/settings/CohortsToCreateInfluenza.csv
inst/settings/CohortsToCreateStrata.csv
inst/settings/README.md
inst/settings/diagnostics/CohortsToCreateCovid.csv
inst/settings/diagnostics/CohortsToCreateFeature.csv
inst/settings/diagnostics/CohortsToCreateInfluenza.csv
inst/settings/diagnostics/CohortsToCreateStrata.csv
inst/settings/featureTimeWindows.csv
inst/settings/subset/BulkStrata.csv
inst/settings/subset/CohortGroups.csv
inst/settings/subset/CohortGroupsDiagnostics.csv
inst/settings/subset/CohortsToCreateCovid.csv
inst/settings/subset/CohortsToCreateFeature.csv
inst/settings/subset/CohortsToCreateInfluenza.csv
inst/settings/subset/CohortsToCreateStrata.csv
inst/settings/subset/featureTimeWindows.csv
inst/settings/subset/targetStrataXref.csv
inst/settings/targetStrataXref.csv
inst/shiny/CharybdisResultsExplorer/CharybdisResultsExplorer.Rproj
inst/shiny/CharybdisResultsExplorer/DataPulls.R
inst/shiny/CharybdisResultsExplorer/PlotsAndTables.R
inst/shiny/CharybdisResultsExplorer/Table1Specs.csv
inst/shiny/CharybdisResultsExplorer/changeLog.Rmd
inst/shiny/CharybdisResultsExplorer/changeLog.html
inst/shiny/CharybdisResultsExplorer/cohortXref.csv
inst/shiny/CharybdisResultsExplorer/cohorts.csv
inst/shiny/CharybdisResultsExplorer/databaseTermsOfUse.csv
inst/shiny/CharybdisResultsExplorer/exampleResultsQuery.sql
inst/shiny/CharybdisResultsExplorer/global.R
inst/shiny/CharybdisResultsExplorer/html/cohortCharacterization.html
inst/shiny/CharybdisResultsExplorer/html/cohortCounts.html
inst/shiny/CharybdisResultsExplorer/html/compareCohortCharacterization.html
inst/shiny/CharybdisResultsExplorer/html/download.html
inst/shiny/CharybdisResultsExplorer/md/about.md
inst/shiny/CharybdisResultsExplorer/md/terms_of_use.md
inst/shiny/CharybdisResultsExplorer/networkSchema.sql
inst/shiny/CharybdisResultsExplorer/server.R
inst/shiny/CharybdisResultsExplorer/ui.R
inst/shiny/CharybdisResultsExplorer/www/favicon.ico
inst/shiny/CharybdisResultsExplorer/www/js/charybdis.js
inst/shiny/CharybdisResultsExplorer/www/js/lib/js.cookie.js
inst/shiny/CharybdisResultsExplorer/www/logo.png
inst/shiny/CharybdisResultsExplorer/www/ohdsi.css
inst/sql/postgresql/networkResultsConstraintsAndIndicies.sql
inst/sql/postgresql/networkResultsSchema.sql
inst/sql/postgresql/removeDuplicateCovariates.sql
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inst/sql/sql_server/BulkFeatureExtraction.sql
inst/sql/sql_server/CohortCounts.sql
inst/sql/sql_server/CopyAndCensorCohorts.sql
inst/sql/sql_server/CreateCohortTable.sql
inst/sql/sql_server/CreateFeatureProportions.sql
inst/sql/sql_server/CreateInclusionStatsTables.sql
inst/sql/sql_server/GetFeatureProportions.sql
inst/sql/sql_server/strata/StratifyByAge.sql
inst/sql/sql_server/strata/StratifyByCohort.sql
inst/sql/sql_server/strata/StratifyByFollowUpTime.sql
inst/sql/sql_server/strata/StratifyByGender.sql
inst/sql/sql_server/strata/StratifyByIndex.sql
inst/sql/sql_server/strata/StratifyByRace.sql
man-roxygen/CdmDatabaseSchema.R
man-roxygen/CohortDef.R
man-roxygen/CohortSetReference.R
man-roxygen/CohortSetSpecs.R
man-roxygen/CohortTable.R
man-roxygen/ConceptCounts.R
man-roxygen/Connection.R
man-roxygen/OracleTempSchema.R
man/Covid19CharacterizationCharybdis-package.Rd
man/createBulkCharacteristics.Rd
man/createCohortTable.Rd
man/getCohortCharacteristics.Rd
man/getInclusionStatistics.Rd
man/getInclusionStatisticsFromFiles.Rd
man/instantiateCohortSet.Rd
man/preMergeDiagnosticsFiles.Rd
man/preMergeResultsFiles.Rd
man/uploadResults.Rd
man/writeBulkCharacteristics.Rd
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
