Files in ohdsi-studies/Covid19EstimationHydroxychloroquine2
A Package Skeleton for Comparative Effectiveness Studies
.Rbuildignore
.Rprofile
.gitignore
Covid19EstimationHydroxychloroquine2.Rproj
DESCRIPTION
HydraConfig.json
NAMESPACE
R/CohortMethod.R
R/CreateAllCohorts.R
R/CreateCohorts.R
R/Diagnostics.R
R/Export.R
R/Main.R
R/MetaAnalysis.R
R/Package.R
R/PremergeCleanShinyData.R
R/RenameDatabaseIds.R
R/Sharing.R
R/ShinyApps.R
R/SynthesizePositiveControls.R
README.md
documents/PLE_HCQ_Protocol_1.6 for EU PAS.pdf
documents/README.md
extras/CodeToRun.R
extras/CodeToRunLocal.R
extras/PackageMaintenance.R
extras/README.md
inst/cohorts/COVID_ID195_V1_Incident_depression_with_no_prior_treatment_and_no_maniapsychoses.json
inst/cohorts/COVID_ID196_V1_Hospitalization_for_psychosis.json
inst/cohorts/COVID_ID197_V1_Suicide_and_suicidal_ideation.json
inst/cohorts/COVID_ID25_V1_Hospitalizations_with_pneumonia.json
inst/cohorts/COVID_ID77_V1_Episodes_of_influenza_narrow.json
inst/cohorts/OHDSICovid19_Hydroxychloroquine__Amoxicillin.json
inst/cohorts/OHDSICovid19_Hydroxychloroquine__Azithromycin.json
inst/cohorts/OHDSI_Cov19_New_users_of_Hydroxychloroquine_with_prior_rheumatoid_arthritis.json
inst/cohorts/OHDSI_Cov19_New_users_of_sulfasazine_with_prior_rheumatoid_arthritis.json
inst/settings/CohortsToCreate.csv
inst/settings/NegativeControls.csv
inst/settings/StudySpecification.json
inst/settings/TcosOfInterest.csv
inst/settings/cmAnalysisList.json
inst/shiny/EvidenceExplorer/DataPulls.R
inst/shiny/EvidenceExplorer/PlotsAndTables.R
inst/shiny/EvidenceExplorer/Table1Specs.csv
inst/shiny/EvidenceExplorer/global.R
inst/shiny/EvidenceExplorer/report/CreatePlotsAndFigures.R
inst/shiny/EvidenceExplorer/report/ReportPlotsAndTables.R
inst/shiny/EvidenceExplorer/report/buildReport.R
inst/shiny/EvidenceExplorer/server.R
inst/shiny/EvidenceExplorer/ui.R
inst/sql/sql_server/COVID_ID195_V1_Incident_depression_with_no_prior_treatment_and_no_maniapsychoses.sql
inst/sql/sql_server/COVID_ID196_V1_Hospitalization_for_psychosis.sql
inst/sql/sql_server/COVID_ID197_V1_Suicide_and_suicidal_ideation.sql
inst/sql/sql_server/COVID_ID25_V1_Hospitalizations_with_pneumonia.sql
inst/sql/sql_server/COVID_ID77_V1_Episodes_of_influenza_narrow.sql
inst/sql/sql_server/CreateCohortTable.sql
inst/sql/sql_server/GetCounts.sql
inst/sql/sql_server/NegativeControlOutcomes.sql
inst/sql/sql_server/OHDSICovid19_Hydroxychloroquine__Amoxicillin.sql
inst/sql/sql_server/OHDSICovid19_Hydroxychloroquine__Azithromycin.sql
inst/sql/sql_server/OHDSI_Cov19_New_users_of_Hydroxychloroquine_with_prior_rheumatoid_arthritis.sql
inst/sql/sql_server/OHDSI_Cov19_New_users_of_sulfasazine_with_prior_rheumatoid_arthritis.sql
man/Covid19EstimationHydroxychloroquine2.Rd
man/createCohorts.Rd
man/execute.Rd
man/exportResults.Rd
man/generateDiagnostics.Rd
man/launchEvidenceExplorer.Rd
man/prepareForEvidenceExplorer.Rd
man/runCohortMethod.Rd
man/synthesizePositiveControls.Rd
man/uploadResults.Rd
