Files in ohdsi-studies/Covid19VaccineAesiIncidenceCharacterization
COVID-19 Vaccine AESI Incidence Characterization
.Rbuildignore
.Rprofile
.gitignore
Covid19VaccineAesiIncidenceCharacterization.Rproj
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/CohortConstruction.R
R/Covid19VaccineAesiIncidenceCharacterization.R
R/Incremental.R
R/Logging.R
R/MergeResults.R
R/ResourceFiles.R
R/RunStudy.R
R/Sharing.R
README.md
STUDY-EXECUTION.md
STUDY-PACKAGE-SETUP.md
extras/CodeToRun.R
extras/Eunomia_CodeToRun.R
extras/PackageMaintenance.R
extras/Vaccine_safety_sensitivity_protocol.pdf
extras/incidence_rates_sensitivity_experiment_results_060121.csv
extras/vaccine safety incidence sensitivity experiment parameters.xlsx
inst/cohort/1JAN 2017-2019 at-risk.json
inst/cohort/1JAN 2017-2019 not-at-risk.json
inst/cohort/1JAN 2017-2019 pregnant.json
inst/cohort/1JAN 2017-2019 prior influenza vaccine.json
inst/cohort/AcuteMyocardialInfarction IP FDA.json
inst/cohort/Anaphylaxis FDA.json
inst/cohort/Anaphylaxis IPED.json
inst/cohort/Appendicitis FDA.json
inst/cohort/BellsPalsy FDA.json
inst/cohort/DeepVeinThrombosis FDA.json
inst/cohort/DeepVeinThrombosis IP coverICD.json
inst/cohort/DeepVeinThrombosis coverICD.json
inst/cohort/DeepVeinThrombosis.json
inst/cohort/DisIntraCoag_FDA.json
inst/cohort/DisseminatedIntravascularCoagulation FDA.json
inst/cohort/Encephalomyelitis IP FDA.json
inst/cohort/HemorrhagicStroke IP FDA.json
inst/cohort/HemorrhagicStroke IP.json
inst/cohort/HemorrhagicStroke.json
inst/cohort/ImmuneThrombocytopenia FDA.json
inst/cohort/MyocarditisPericarditis FDA.json
inst/cohort/NonHemorrhagicStroke IP FDA.json
inst/cohort/NonHemorrhagicStroke IP.json
inst/cohort/NonHemorrhagicStroke broad.json
inst/cohort/NonHemorrhagicStroke.json
inst/cohort/PulmonaryEmbolism FDA.json
inst/cohort/PulmonaryEmbolism IP.json
inst/cohort/PulmonaryEmbolism.json
inst/cohort/SeizureDisorder.json
inst/cohort/TransverseMyelitis IP.json
inst/settings/analysisSettings.json
inst/settings/outcomeRef.csv
inst/settings/rEnvironmentSnapshot.csv
inst/settings/subgroupRef.csv
inst/settings/targetRef.csv
inst/settings/timeAtRisk.csv
inst/sql/sql_server/CreateCohortTable.sql
inst/sql/sql_server/CreateRefTables.sql
inst/sql/sql_server/GetIncidenceAnalysisResults.sql
inst/sql/sql_server/InsertOutcomeRef.sql
inst/sql/sql_server/InsertTargetRef.sql
inst/sql/sql_server/InsertTimeAtRiskRef.sql
inst/sql/sql_server/outcome/AMI_IP.sql
inst/sql/sql_server/outcome/AMI_IP_FDA.sql
inst/sql/sql_server/outcome/AcuteMyocardialInfarction.sql
inst/sql/sql_server/outcome/Anaphylaxis FDA.sql
inst/sql/sql_server/outcome/Anaphylaxis IPED.sql
inst/sql/sql_server/outcome/Anaphylaxis.sql
inst/sql/sql_server/outcome/Appendicitis FDA.sql
inst/sql/sql_server/outcome/Appendicitis IP.sql
inst/sql/sql_server/outcome/Appendicitis.sql
inst/sql/sql_server/outcome/BellsPalsy FDA.sql
inst/sql/sql_server/outcome/BellsPalsy.sql
inst/sql/sql_server/outcome/DVT_IP_coverICD.sql
inst/sql/sql_server/outcome/DVT_coverICD.sql
inst/sql/sql_server/outcome/DeepVeinThrombosis FDA.sql
inst/sql/sql_server/outcome/DeepVeinThrombosis.sql
inst/sql/sql_server/outcome/DisIntraCoag.sql
inst/sql/sql_server/outcome/DisIntraCoag_FDA.sql
inst/sql/sql_server/outcome/DisIntraCoag_IP.sql
inst/sql/sql_server/outcome/Encephalomyelitis IP FDA.sql
inst/sql/sql_server/outcome/Encephalomyelitis IP.sql
inst/sql/sql_server/outcome/Encephalomyelitis.sql
inst/sql/sql_server/outcome/FebrileSeizure.sql
inst/sql/sql_server/outcome/GBS_IP_Primary.sql
inst/sql/sql_server/outcome/GuillainBarreSyndrome IP.sql
inst/sql/sql_server/outcome/GuillainBarreSyndrome.sql
inst/sql/sql_server/outcome/HemorrhagicStroke IP FDA.sql
inst/sql/sql_server/outcome/HemorrhagicStroke IP.sql
inst/sql/sql_server/outcome/HemorrhagicStroke.sql
inst/sql/sql_server/outcome/ImmuneThrombocytopenia FDA.sql
inst/sql/sql_server/outcome/ImmuneThrombocytopenia.sql
inst/sql/sql_server/outcome/Kawasaki.sql
inst/sql/sql_server/outcome/MyocarditisPericarditis FDA.sql
inst/sql/sql_server/outcome/MyocarditisPericarditis.sql
inst/sql/sql_server/outcome/Narcolepsy.sql
inst/sql/sql_server/outcome/NonHemorrhagicStroke IP FDA.sql
inst/sql/sql_server/outcome/NonHemorrhagicStroke IP.sql
inst/sql/sql_server/outcome/NonHemorrhagicStroke broad.sql
inst/sql/sql_server/outcome/NonHemorrhagicStroke.sql
inst/sql/sql_server/outcome/PulmonaryEmbolism FDA.sql
inst/sql/sql_server/outcome/PulmonaryEmbolism IP.sql
inst/sql/sql_server/outcome/PulmonaryEmbolism.sql
inst/sql/sql_server/outcome/Seizure.sql
inst/sql/sql_server/outcome/SeizureDisorder.sql
inst/sql/sql_server/outcome/TransverseMyelitis IP.sql
inst/sql/sql_server/outcome/TransverseMyelitis.sql
inst/sql/sql_server/runIncidenceAnalysis.sql
inst/sql/sql_server/subgroup/S1AgeGroupByGender.sql
inst/sql/sql_server/subgroup/raceBlack.sql
inst/sql/sql_server/subgroup/raceWhite.sql
inst/sql/sql_server/target/1APR 2017-2019 w visit.sql
inst/sql/sql_server/target/1APR 2017-2019.sql
inst/sql/sql_server/target/1APR 2020.sql
inst/sql/sql_server/target/1JAN 2017-19_w_flu_vax.sql
inst/sql/sql_server/target/1JAN 2017-2019 at-risk.sql
inst/sql/sql_server/target/1JAN 2017-2019 not-at-risk.sql
inst/sql/sql_server/target/1JAN 2017-2019 pregnant.sql
inst/sql/sql_server/target/1JAN 2017-2019 w visit.sql
inst/sql/sql_server/target/1JAN 2017-2019.sql
inst/sql/sql_server/target/1JAN 2017-2020.sql
inst/sql/sql_server/target/1JAN 2017.sql
inst/sql/sql_server/target/1JAN 2018.sql
inst/sql/sql_server/target/1JAN 2019.sql
inst/sql/sql_server/target/1JAN 2020.sql
inst/sql/sql_server/target/1JAN_2017-19_prior_flu_vax.sql
inst/sql/sql_server/target/1JAN_2017-19_w_well_visit.sql
inst/sql/sql_server/target/1JAN_2017-19_wo_pr_obs.sql
inst/sql/sql_server/target/1JUL 2017-2019.sql
inst/sql/sql_server/target/1JUL 2020.sql
inst/sql/sql_server/target/1OCT 2017-2019.sql
inst/sql/sql_server/target/1OCT 2020.sql
inst/sql/sql_server/target/flu vaccine 2017-2019.sql
inst/sql/sql_server/target/flu vaccine 2017-2020.sql
inst/sql/sql_server/target/random visit 2017-2019.sql
inst/sql/sql_server/target/random visit 2017-2020.sql
inst/sql/sql_server/target/random well visit 2017-2019.sql
inst/sql/sql_server/target/rnd_visit_2017-19_w_WellVisit.sql
man-roxygen/CdmDatabaseSchema.R
man-roxygen/CohortDef.R
man-roxygen/CohortSetReference.R
man-roxygen/CohortSetSpecs.R
man-roxygen/CohortStagingTable.R
man-roxygen/CohortTable.R
man-roxygen/ConceptCounts.R
man-roxygen/Connection.R
man-roxygen/TempEmulationSchema.R
man/Covid19VaccineAesiIncidenceCharacterization-package.Rd
man/createCohortTable.Rd
man/instantiateCohortSet.Rd
man/preMergeResultsFiles.Rd
man/uploadResults.Rd
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
