Man pages for ohdsi-studies/LegendT2dm
Large-Scale Evidence Generation and Evaluation in a Network of Databases
| addDatabaseIdToTables | Add databaseId column to tables in results *.zip files |
| assessPhenotypes | Assess propensity models |
| assessPropensityModels | Assess propensity models |
| computeCovariateBalance | Compute covariate balance for each comparison |
| createDataModelOnServer | Create the data model tables on a database server. |
| createDataModelSqlFile | Create a SQL file to construct data model tables on a... |
| createExposureCohorts | Create the exposure cohorts |
| createOutcomeCohorts | Create the outcome cohorts |
| doMetaAnalysis | Perform random-effects meta-analysis on CES results on data... |
| execute | Execute OHDSI LEGEND study |
| exportResults | Export all results to tables |
| fetchAllDataFromServer | Fetch all data on the cohorts for analysis |
| filterByExposureCohortsSize | Filter exposure pairs by size of the cohorts |
| generateAllCohortMethodDataObjects | Construct all cohortMethodData object |
| grantPermissionOnServer | Grant read-permission on server |
| LegendT2dm-package | LegendT2dm: Large-Scale Evidence Generation and Evaluation in... |
| prepareForEvidenceExplorer | Prepare results for the LEGEND-T2DM Evidence Explorer Shiny... |
| prepareStagedExecution | Utility function to split up CES execution, with only a... |
| printCohortClose | Print cohort closing line |
| printCohortDefinition | Print cohort definition from file name |
| printCohortDefinitionFromNameAndJson | Print cohort definition with specified name |
| printConceptSet | Print concept set |
| printExitCriteria | Print exit criteria |
| printInclusionCriteria | Print inclusion criteria |
| removeResultsFromDatabase | Remove results from the database server. |
| runCohortMethod | Run the cohort method package |
| unnumberAdditionalCriteria | Find the subsections corresponding to additional criteria and... |
| uploadPhenotypeResults | Upload cohort diagnostic results to OHDSI server |
| uploadPsAssessmentResults | Upload propensity score assessment results to OHDSI server |
| uploadResultsToDatabase | Upload results to the database server. |
| uploadStudyResults | Upload the study results to OHDSI server |
