Files in ohdsi-studies/PioneerWatchfulWaiting
PIONEER / EHDEN / OHDSI prostate cancer study
.Rbuildignore
.gitignore
.howfairis.yml
DESCRIPTION
LICENSE
LICENSE.txt
NAMESPACE
PIONEERCharactetization.Rproj
R/CohortCharacterization.R
R/CohortConstruction.R
R/CohortDiagnostics.R
R/FeatureConstruction.R
R/GenerateSurvival.R
R/Incremental.R
R/Logging.R
R/RepackDiagnosticsFiles.R
R/ResourceFiles.R
R/RunStudy.R
R/Sharing.R
R/Shiny.R
R/StrataConstruction.R
R/getDistributions.R
README.md
codemeta.json
docker/Dockerfile
docker/README-Docker.md
docker/pioneer-package.env
extras/Authenticate.R
extras/CodeToRun.R
extras/Download-cohorts-from-WebAPI.R
extras/PackageMaintenance.R
extras/PioneerWatchfulWaiting.pdf
extras/Protocol_RQ2_OHDSI_FINAL.pdf
extras/renv_setup.R
extras/update_cohort_definitions.R
inst/.gitignore
inst/OHDSI studyathon phenotype tracker APRIL 2021.xlsx
inst/cohorts/101.json
inst/cohorts/102.json
inst/cohorts/103.json
inst/cohorts/104.json
inst/cohorts/105.json
inst/cohorts/106.json
inst/cohorts/107.json
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inst/cohorts/120.json
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inst/cohorts/201.json
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inst/cohorts/206.json
inst/cohorts/207.json
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inst/cohorts/301.json
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inst/cohorts/320.json
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inst/cohorts/325.json
inst/cohorts/326.json
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inst/cohorts/328.json
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inst/cohorts/330.json
inst/cohorts/331.json
inst/cohorts/332.json
inst/cohorts/333.json
inst/cohorts/334.json
inst/cohorts/335.json
inst/cohorts/336.json
inst/cohorts/337.json
inst/cohorts/338.json
inst/cohorts/new PCa.json
inst/parse_phenotype_tracker.ipynb
inst/settings/BulkStrata.csv
inst/settings/CohortGroups.csv
inst/settings/CohortGroupsDiagnostics.csv
inst/settings/CohortsToCreateOutcome.csv
inst/settings/CohortsToCreateStrata.csv
inst/settings/CohortsToCreateTarget.csv
inst/settings/README.md
inst/settings/diagnostics/CohortsToCreateOutcome.csv
inst/settings/diagnostics/CohortsToCreateStrata.csv
inst/settings/diagnostics/CohortsToCreateTarget.csv
inst/settings/featureTimeWindows.csv
inst/settings/targetStrataXref.csv
inst/shiny/PioneerWatchfulWaitingExplorer/CharybdisResultsExplorer.Rproj
inst/shiny/PioneerWatchfulWaitingExplorer/DataPulls.R
inst/shiny/PioneerWatchfulWaitingExplorer/PlotsAndTables.R
inst/shiny/PioneerWatchfulWaitingExplorer/Table1Specs.csv
inst/shiny/PioneerWatchfulWaitingExplorer/changeLog.Rmd
inst/shiny/PioneerWatchfulWaitingExplorer/changeLog.html
inst/shiny/PioneerWatchfulWaitingExplorer/cohortXref.csv
inst/shiny/PioneerWatchfulWaitingExplorer/cohorts.csv
inst/shiny/PioneerWatchfulWaitingExplorer/databaseTermsOfUse.csv
inst/shiny/PioneerWatchfulWaitingExplorer/exampleResultsQuery.sql
inst/shiny/PioneerWatchfulWaitingExplorer/ggsurvtable.R
inst/shiny/PioneerWatchfulWaitingExplorer/global.R
inst/shiny/PioneerWatchfulWaitingExplorer/html/cohortCharacterization.html
inst/shiny/PioneerWatchfulWaitingExplorer/html/cohortCounts.html
inst/shiny/PioneerWatchfulWaitingExplorer/html/compareCohortCharacterization.html
inst/shiny/PioneerWatchfulWaitingExplorer/html/download.html
inst/shiny/PioneerWatchfulWaitingExplorer/md/about.md
inst/shiny/PioneerWatchfulWaitingExplorer/md/terms_of_use.md
inst/shiny/PioneerWatchfulWaitingExplorer/networkSchema.sql
inst/shiny/PioneerWatchfulWaitingExplorer/server.R
inst/shiny/PioneerWatchfulWaitingExplorer/survplot_core.R
inst/shiny/PioneerWatchfulWaitingExplorer/ui.R
inst/shiny/PioneerWatchfulWaitingExplorer/utilities.R
inst/shiny/PioneerWatchfulWaitingExplorer/www/Pioneer_logo.jpg
inst/shiny/PioneerWatchfulWaitingExplorer/www/favicon.ico
inst/shiny/PioneerWatchfulWaitingExplorer/www/js/charybdis.js
inst/shiny/PioneerWatchfulWaitingExplorer/www/js/lib/js.cookie.js
inst/shiny/PioneerWatchfulWaitingExplorer/www/logo.png
inst/shiny/PioneerWatchfulWaitingExplorer/www/ohdsi.css
inst/sql/sql_server/101.sql
inst/sql/sql_server/102.sql
inst/sql/sql_server/103.sql
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inst/sql/sql_server/339.sql
inst/sql/sql_server/340.sql
inst/sql/sql_server/341.sql
inst/sql/sql_server/342.sql
inst/sql/sql_server/343.sql
inst/sql/sql_server/BulkFeatureExtraction.sql
inst/sql/sql_server/CohortCounts.sql
inst/sql/sql_server/CopyAndCensorCohorts.sql
inst/sql/sql_server/CreateCohortTable.sql
inst/sql/sql_server/CreateFeatureProportions.sql
inst/sql/sql_server/CreateInclusionStatsTables.sql
inst/sql/sql_server/GetFeatureProportions.sql
inst/sql/sql_server/TimeToEvent.sql
inst/sql/sql_server/TimeToEventCombined.sql
inst/sql/sql_server/new PCa.sql
inst/sql/sql_server/quartiles/AgeAtDiagnosis.sql
inst/sql/sql_server/quartiles/CharlsonAtDiagnosis.sql
inst/sql/sql_server/quartiles/IQRComplementaryTables.sql
inst/sql/sql_server/quartiles/PsaAtDiagnosis.sql
inst/sql/sql_server/quartiles/QuartilesAggregation.sql
inst/sql/sql_server/quartiles/RemoveComplementaryTables.sql
inst/sql/sql_server/quartiles/TimeToOutcome.sql
inst/sql/sql_server/quartiles/YearOfDiagnosis.sql
inst/sql/sql_server/strata/StratifyByAge.sql
inst/sql/sql_server/strata/StratifyByCohort.sql
inst/sql/sql_server/strata/StratifyByFollowUpTime.sql
inst/sql/sql_server/strata/StratifyByGender.sql
inst/sql/sql_server/strata/StratifyByIndex.sql
inst/sql/sql_server/strata/StratifyByRace.sql
man-roxygen/CdmDatabaseSchema.R
man-roxygen/CohortDef.R
man-roxygen/CohortSetReference.R
man-roxygen/CohortSetSpecs.R
man-roxygen/CohortTable.R
man-roxygen/ConceptCounts.R
man-roxygen/Connection.R
man-roxygen/OracleTempSchema.R
man/createBulkCharacteristics.Rd
man/createCohortTable.Rd
man/getCohortCharacteristics.Rd
man/getInclusionStatistics.Rd
man/getInclusionStatisticsFromFiles.Rd
man/instantiateCohortSet.Rd
man/preMergeDiagnosticsFiles.Rd
man/preMergeResultsFiles.Rd
man/uploadResults.Rd
man/writeBulkCharacteristics.Rd
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
