Files in ohdsi-studies/TofacitinibSafetyinRA
A case study in the comparative safety of tofacitinib, adalimumab and etanercept in patients with rheumatoid arthritis
.Rbuildignore
.Rprofile
.gitignore
Cohort Definitions/Cohorts with EHDEN Concept Set/Comparator 1 - EHDEN update - Enbrel [etanercept] in RA_RCT version_0208.json
Cohort Definitions/Cohorts with EHDEN Concept Set/Comparator 1 - EHDEN update - Enbrel [etanercept] in RA_RWD version_0208.json
Cohort Definitions/Cohorts with EHDEN Concept Set/Comparator 2 - EHDEN update - Humira [adalimumab] in RA_RCT version_0208.json
Cohort Definitions/Cohorts with EHDEN Concept Set/Comparator 2 - EHDEN update - Humira [adalimumab] in RA_RWD version_0208.json
Cohort Definitions/Cohorts with EHDEN Concept Set/Target - EHDEN update - Xeljanz [tofacitinib] in RA_RCT version_0208.json
Cohort Definitions/Cohorts with EHDEN Concept Set/Target - EHDEN update - Xeljanz [tofacitinib] in RA_RWD version_0208.json
Cohort Definitions/Cohorts with Original RA Concept Set/Comparator 1 - Enbrel [etanercept] in RA_RCT version_1108.json
Cohort Definitions/Cohorts with Original RA Concept Set/Comparator 1 - Enbrel [etanercept] in RA_RWD version_1108.json
Cohort Definitions/Cohorts with Original RA Concept Set/Comparator 2 - Humira [adalimumab] in RA_RCT version_1108.json
Cohort Definitions/Cohorts with Original RA Concept Set/Comparator 2 - Humira [adalimumab] in RA_RWD version_1108.json
Cohort Definitions/Cohorts with Original RA Concept Set/Target - Xeljanz [tofacitinib] in RA_RCT version_1108.json
Cohort Definitions/Cohorts with Original RA Concept Set/Target - Xeljanz [tofacitinib] in RA_RWD version_1108.json
Cohort Definitions/Old Outcomes/Hepatic events.json
Cohort Definitions/Old Outcomes/Malignances excluding nonmelanoma skin cancer.json
Cohort Definitions/Old Outcomes/Non-MACE cardiovascular events.json
Cohort Definitions/Old Outcomes/Opportunistic infections.json
Cohort Definitions/Outcome - [LEGEND] Acute MI definition.json
Cohort Definitions/Outcome - [LEGEND] Stroke definition.json
Cohort Definitions/overview.md
DESCRIPTION
HydraConfig.json
NAMESPACE
Overall Documentation/OHDSI F2F protocol v2.2.docx
Overall Documentation/OHDSI TOFA_1pager.docx
Overall Documentation/OHDSI-0515_Wang_F2F Study Overview.pdf
R/CohortMethod.R
R/CreateAllCohorts.R
R/CreateCohorts.R
R/Diagnostics.R
R/Export.R
R/Main.R
R/Package.R
R/ShinyApps.R
R/SubmitResults.R
R/SynthesizePositiveControls.R
README.md
TofacitinibSafetyinRA.Rproj
extras/CodeToRun.R
extras/PackageMaintenance.R
inst/cohorts/COVID_ID190_V1_Stroke_ischemic_or_hemorrhagic_events.json
inst/cohorts/COVID_ID193_V1_Acute_myocardial_infarction_events.json
inst/cohorts/TofacitinibSafetyinRA_New_users_of_adalimumab_RWD_definition.json
inst/cohorts/TofacitinibSafetyinRA_New_users_of_adalimumab_from_RCT_definition.json
inst/cohorts/TofacitinibSafetyinRA_New_users_of_etanercept_RWD_definition.json
inst/cohorts/TofacitinibSafetyinRA_New_users_of_etanercept_from_RCT_definition.json
inst/cohorts/TofacitinibSafetyinRA_New_users_of_tofactinib_RWD_definition.json
inst/cohorts/TofacitinibSafetyinRA_New_users_of_tofactinib_from_RCT_definition.json
inst/settings/CohortsToCreate.csv
inst/settings/NegativeControls.csv
inst/settings/StudySpecification.json
inst/settings/TcosOfInterest.csv
inst/settings/cmAnalysisList.json
inst/shiny/EvidenceExplorer/DataPulls.R
inst/shiny/EvidenceExplorer/EvidenceExplorer.Rproj
inst/shiny/EvidenceExplorer/PlotsAndTables.R
inst/shiny/EvidenceExplorer/Table1Specs.csv
inst/shiny/EvidenceExplorer/global.R
inst/shiny/EvidenceExplorer/server.R
inst/shiny/EvidenceExplorer/ui.R
inst/sql/sql_server/COVID_ID190_V1_Stroke_ischemic_or_hemorrhagic_events.sql
inst/sql/sql_server/COVID_ID193_V1_Acute_myocardial_infarction_events.sql
inst/sql/sql_server/CreateCohortTable.sql
inst/sql/sql_server/GetCounts.sql
inst/sql/sql_server/NegativeControlOutcomes.sql
inst/sql/sql_server/TofacitinibSafetyinRA_New_users_of_adalimumab_RWD_definition.sql
inst/sql/sql_server/TofacitinibSafetyinRA_New_users_of_adalimumab_from_RCT_definition.sql
inst/sql/sql_server/TofacitinibSafetyinRA_New_users_of_etanercept_RWD_definition.sql
inst/sql/sql_server/TofacitinibSafetyinRA_New_users_of_etanercept_from_RCT_definition.sql
inst/sql/sql_server/TofacitinibSafetyinRA_New_users_of_tofactinib_RWD_definition.sql
inst/sql/sql_server/TofacitinibSafetyinRA_New_users_of_tofactinib_from_RCT_definition.sql
man/TofacitinibSafetyinRA.Rd
man/createCohorts.Rd
man/execute.Rd
man/exportResults.Rd
man/generateDiagnostics.Rd
man/launchEvidenceExplorer.Rd
man/prepareForEvidenceExplorer.Rd
man/runCohortMethod.Rd
man/submitResults.Rd
man/synthesizePositiveControls.Rd
