Man pages for olssol/tburden
Tumor burden based treatment effect evaluation
| get_uti_fsurv | AUC_Surv based on true data |
| get_uti_true | AUC_Surv based on true data |
| plot_km | Plot survival cures |
| tb_bs_draw | Draw bootstrap samples |
| tb_data_format | Format data |
| tb_data_permute | Permute data |
| tb_des_freq_or | Response frequency table |
| tb_des_plt_pfs | Plot survival by response |
| tb_des_plt_pfs_tbcut | Plot survival by response |
| tb_des_plt_tb_mean | Spider plot of tumor burden |
| tb_des_plt_tb_resp_waterf | Waterfall plot of tumor burden |
| tb_des_plt_tb_sub | Spider plot of tumor burden |
| tb_des_pseu_or | Define Pseudo Overall Response |
| tb_des_simu_all | Simulate data for design |
| tb_des_simu_pfs | Simulate PFS in Days |
| tb_des_simu_tb | Simulate tumor burden for study design |
| tb_des_simu_tb_giv_surv | Simulate tumor burden for study design |
| tb_des_summary | TB summary |
| tb_des_surv_par | Find survival related design parameters |
| tb_des_surv_par_rand | Find survival related design parameters |
| tb_des_tpar | Find tumor burden related design parameters |
| tb_des_tpar_rand | Find tumor burden related design parameters |
| tb_des_tpoly | Polynomial tumor burden |
| tb_draw_bs | Draw bootstrap samples |
| tb_est_by_censor | Summarize utility by censoring |
| tb_estimate | Get average utility |
| tb_estimate_summary | Summarize estimation results |
| tb_extract_aic | Get AIC |
| tb_extract_rst | Get data from All results |
| tb_extract_uti | Extract subject level utilities |
| tb_gamma_plt_uti | Plot Gamma related utilities |
| tb_gamma_simu_bs | Evaluate treatment effect by AUC_SURV by BS |
| tb_gamma_simu_surv | Simulate survival outcomes for RCT |
| tb_gamma_simu_uti | Evaluate treatment effect by AUC_SURV |
| tb_get_all | Overall results |
| tb_get_all_bs | Overall results with bootstrap results |
| tb_get_all_curves | Get curves from all patients |
| tb_get_data | Get Analysis Data |
| tb_get_para_est | Extract Parameters |
| tb_get_pt | Get patient data |
| tb_imp_surv | Impute survival |
| tb_km_surv | Fit KM survival curve |
| tb_msm_fit | Fit Survival MSM |
| tb_msm_imp_single | Impute survival for single patient |
| tb_msm_set | Get survival data for multi-state model |
| tb_plt_all_curves | Get curves from all patients |
| tb_plt_estimate | Plot correlation of utilities |
| tb_plt_fu | Plot survival curve with area under the curve |
| tb_plt_ind | Plot a patient |
| tb_plt_km | Survival curves |
| tb_plt_km_imp | Survival curves for imputed survival |
| tb_plt_onstudy | Plot patients by enrollment |
| tb_plt_surv | Plot survival curve with area under the curve |
| tb_plt_tb | Spider plot of tumor burden |
| tb_plt_tb_histogram | Histogram of TB at a given day for all patients |
| tb_plt_tb_ind | Spider plot of tumor burden for individual subject with... |
| tb_plt_tb_slope | Histogram of last slope |
| tb_predict | Tumor burden prediction |
| tb_prepare_tb_dta | Combine survival and tumor burden data |
| tb_pseu_or | Define Pseudo Overall Response |
| tb_pt_curve_emp | TB linear prediction points |
| tb_pt_curve_emp_single | TB linear prediction points |
| tb_pt_curve_summary | TB curves summarization |
| tb_pt_hist | Generate history a patient |
| tb_pt_hist_auc | Calculate AUC given history |
| tb_pt_insert | Insert tb and time |
| tb_regression | Tumor burden regression |
| tb_regression_single | Tumor burden regression |
| tb_set_surv | Get survival censoring status |
| tb_shiny | Run Web-Based application |
| tb_simu_all | Simulate studies |
| tb_simu_cov_es | Simulate covariates |
| tb_simu_extract | Extract model parameters |
| tb_simu_present | Summarize simulated patients |
| tb_simu_summary | Summarize simulated results |
| tb_simu_surv | Simulate Survival time for all |
| tb_simu_surv_wb | Simulate Survival time for all based on weibull |
| tb_simu_tb | Simulate Tumor Burden by quadratic mixed effect model |
| tb_simu_tb_changep | Simulate Tumor Burden Change Point |
| tb_simu_tb_mis | Simulate Missing Tumor Burden |
| tb_simu_tb_nadir | Simulate Tumor Burden Change Point |
| tb_simu_tb_piecewise | Simulate Tumor Burden by Piecewise Linear Model |
| tb_simu_tb_piecewise_nadir | Simulate Tumor Burden by Piecewise Linear Model by Nadir and... |
| tb_simu_tb_visit | Simulate Tumor Burden Visit Time |
| tb_summary_imp | Summarize imputed survival data |
| tb_surv_cut | Get survival curves cut by a time point |
| tb_surv_fit | Cox Regression |
| tb_surv_imp | Get survival data for multi-state model |
| tb_tb_impr | Get improved tumor burden |
| tb_tb_obs | Observed TB mean, sd and missing rate |
| tb_tb_obs_lastslope | Observed Last Slope |
| tb_tb_resp | Tumor burden response |
| tb_tb_surv | Median survival by best TB |
| tburden-package | The 'tburden' package. |
| tb_uti_rst | Utility from the original results |
| tb_uti_surv_obs_single | Utility based on observed survival only |
| tb_uti_surv_prob_single | Utility based on survival function only |
| tb_weibull_fit | Fit PFS Weibull |
| tb_weibull_imp | Impute weibull survival |
| tb_weibull_imp_2 | Impute weibull survival |
| tb_weibull_imp_single | Impute survival for single patient based on weibull... |
| tb_xbeta | Get X Beta by formula |
| tkt_assign | Assign text to numeric vector |
| tkt_lambda | Get censoring risk by annual dropout rate |
| tkt_pval | Get P Values |
| tkt_rexp | Simulate time to events in days |
| tkt_simu_enroll | Simulate Enrollment Time |
| tkt_simu_pwexp | Simulate from piecewise constant exponential |
| tkt_subset | Get subset of data by ID |
| tkt_survfit_median | Get table of median from survfit results |
