Files in oncoclass/hemaClass
One-by-one normalization and classification of hematological malignacies
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/ABCGCB.R
R/ABCGCBCoef.R
R/BAGS.R
R/REGS.R
R/RcppExports.R
R/attachMessage.R
R/fitOS.R
R/hemaClass-package.R
R/makeAll.R
R/microarrayScale.R
R/readBAGSCoef.R
R/readCelfiles.R
R/readDrugCoef.R
R/readReference.R
R/rmaPreprocessing.R
R/rmaReference.R
R/rowSds.R
R/runHemaClass.R
README.md
hemaClass.Rproj
inst/CITATION
inst/NEWS.Rd
inst/README.md
inst/extdata/ABCGCB/ABCGCB.coef.rds
inst/extdata/BAGS/BAGS.coef.rds
inst/extdata/Drugs/Cyclophosphamide.resistance.class.coef.rds
inst/extdata/Drugs/Cyclophosphamide.resistance.pred.coef.rds
inst/extdata/Drugs/Dexamethasone.resistance.class.coef.rds
inst/extdata/Drugs/Dexamethasone.resistance.pred.coef.rds
inst/extdata/Drugs/Doxorubicin.resistance.class.coef.rds
inst/extdata/Drugs/Doxorubicin.resistance.pred.coef.rds
inst/extdata/Drugs/Melphalan.resistance.class.coef.rds
inst/extdata/Drugs/Melphalan.resistance.pred.coef.rds
inst/extdata/Drugs/Rituximab.resistance.class.Cor.coef.rds
inst/extdata/Drugs/Rituximab.resistance.class.Lytisk.coef.rds
inst/extdata/Drugs/Rituximab.resistance.class.Lytisk2.coef.rds
inst/extdata/Drugs/Rituximab.resistance.class.coef.rds
inst/extdata/Drugs/Rituximab.resistance.pred.Cor.coef.rds
inst/extdata/Drugs/Rituximab.resistance.pred.coef.rds
inst/extdata/Drugs/Vincristine.resistance.class.coef.rds
inst/extdata/Drugs/Vincristine.resistance.pred.coef.rds
inst/extdata/Drugs/resistance.classifier.coef.rds
inst/extdata/Drugs/resistance.predictor.coef.rds
inst/extdata/References/CHEPRETRO.ref.rds
inst/extdata/References/IDRC.ref.rds
inst/extdata/References/LLMPPCHOP.ref.rds
inst/extdata/References/LLMPPRCHOP.ref.rds
inst/extdata/References/MDFCI.ref.rds
inst/extdata/References/UAMS.ref.rds
inst/extdata/celfiles/H333_(HG-U133_Plus_2).CEL
inst/extdata/celfiles/H344_(HG-U133_Plus_2).CEL
inst/extdata/celfiles/H345_(HG-U133_Plus_2).CEL
inst/extdata/celfiles/H371_(HG-U133_Plus_2).CEL
inst/website/Database/Annotation/HGU133Plus2.na33.annot.rds
inst/website/Database/Classification/fit.ABCGCB2.OS.rds
inst/website/Database/Classification/fit.ABCGCB2.PFS.rds
inst/website/Database/Classification/metadataCombined.rds
inst/website/Database/LLMPPCHOP/GEP/GEPLLMPPCHOP_RMA_affy.rds
inst/website/Database/LLMPPCHOP/Metadata/metadataLLMPPCHOP.rds
inst/website/Database/LLMPPRCHOP/GEP/GEPLLMPPRCHOP_RMA_affy.rds
inst/website/Database/LLMPPRCHOP/Metadata/metadataLLMPPRCHOP.rds
inst/website/server.R
inst/website/ui.R
inst/website/www/About.html
inst/website/www/News-filer/colorschememapping.xml
inst/website/www/News-filer/filelist.xml
inst/website/www/News-filer/themedata.thmx
inst/website/www/News.html
inst/website/www/Papers.html
inst/website/www/SurvivalCurvesNote.html
inst/website/www/bootstrap.css
inst/website/www/figures/Hemaclass.png
inst/website/www/figures/RMA_preprocessing.png
inst/website/www/figures/bags.png
inst/website/www/figures/build_in_data.png
inst/website/www/figures/centroblast.jpg
inst/website/www/figures/choose_cel.png
inst/website/www/figures/class_results.png
inst/website/www/figures/human.png
inst/website/www/figures/information.png
inst/website/www/figures/load_data.png
inst/website/www/figures/manual_metadata.png
inst/website/www/figures/metadata.png
inst/website/www/figures/nextlogo.jpg
inst/website/www/figures/patient_summaries.png
inst/website/www/figures/plos.png
inst/website/www/figures/probeset.png
inst/website/www/figures/regs.png
inst/website/www/figures/results.png
inst/website/www/figures/results_tab.png
inst/website/www/figures/slider.png
inst/website/www/figures/survival_plot.png
inst/website/www/figures/tabpanel.png
inst/website/www/hemaClass.html
inst/website/www/howto.html
man/ABCGCB.Rd
man/BAGS.Rd
man/REGS.Rd
man/fitOS.Rd
man/hemaClass-package.Rd
man/makeAll.Rd
man/microarrayScale.Rd
man/readABCGCBCoef.Rd
man/readBAGSCoef.Rd
man/readCelfiles.Rd
man/readDrugCoef.Rd
man/readReference.Rd
man/rmaPreprocessing.Rd
man/rmaReference.Rd
man/rowSds.Rd
man/runHemaClass.Rd
src/RcppExports.cpp
src/medianPolish_RMA.cpp
src/quantileNorm.cpp
src/userRMA.cpp
tests/test-all.R
tests/testthat/test-RMA_norm.R
tests/testthat/test-locale.R
tests/testthat/test-rowX-colX.R
tests/testthat/test-testthat.R
vignettes/howto.Rmd
