| anClique | 'anClique' class constructor | 
| anClique-class | 'anClique' S4 class for annotating isotopes and adducts | 
| cliqueMS | 'cliqueMS' annotates isotopes and adducts in m/z data | 
| computeCliques | Computes clique groups from a similarity network | 
| createanClique | 'createanClique' generic function to create an object of... | 
| createNetwork | Generic function to create a similarity network from... | 
| ex.cliqueGroups | Example m/z processed data | 
| getAnnotation | Annotate adducts and fragments | 
| getCliques | Compute clique groups from processed m/z data | 
| getIsotopes | Annotate isotopes | 
| negative.adinfo | Default list of negative charged adducts | 
| positive.adinfo | Default list of positive charged adducts | 
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