Man pages for pacific-hake/hakedataUSA
Extract USA Data for Pacific Hake
| calc_ageerror | Calculate ageing error matrix |
| calc_calendar_date | Find the date for a weekday |
| coalesce_join | Mutating join |
| f_date | Format dates |
| format_big_number | Format an object with a comma |
| f_vessel_type | Format 'VESSEL_TYPE' as a character |
| get_confidential | Get number of unique values per grouping |
| get_depth_by_year | Get depth data by year and calculate boxplot stats on it. |
| get_local | Load an object from an '.Rdat' file |
| hakedata_sql_password | Find username and passwords for databases |
| hakedata_wd | Find the working directory for 'hake-assessment' |
| hakedata_year | Find last year of data for current assessment |
| load_age_fishery | Load data and create age compositions |
| make_wtatage_plots | Write Weight-At-Age Plots to Disk |
| maturity_at_age | Proportion mature at each age |
| pipe | Pipe operator |
| plot_colour | Colours for the Hake Assessment |
| plot_raw_age | Workup At-Sea and PacFIN lengths and weights |
| plot_theme | Theme For 'theme' |
| plot_weight_at_age | Plot weight-at-age data |
| process_age_sea | Process age data from the Pacific Hake U.S. at-sea fishery |
| process_age_shore | Workup shoreside composition data |
| process_catch_norpac | Process NORPAC catches |
| process_catch_pacfin | Print summaries and figures for catches from PacFIN |
| process_database | Process the raw data from 'pull_database()' |
| process_weight_at_age | Create weight-at-age files for hake assessment |
| process_weight_at_age_survey | Get the weight-at-age data from the NWFSC server |
| pull_database | Pull data from databases for Pacific Hake |
| pull_surveyageproportions | Calculate age proportions for the acoustic age-2+ survey |
| queryDB | Wrapper to make a query from a sql file and get the data from... |
| quotas | Quota information for U.S. sectors of Pacific Hake fishery |
| update_ss3_catch | Update the catches in a Stock Synthesis file |
| weight_at_age_outlier | Identify weight-at-age outliers |
| weight_at_age_read | Read weight-at-age files from the disk and filter... |
| weight_at_age_wide | Turn a long data frame of weight-at-age data into a wide data... |
| write_bridging | Write a set of Stock Synthesis input files to a directory for... |
| write_wtatage_file | Write weight-at-age file |
