API for pahanc/malariasimulation_Ace_params
An individual based model for malaria
| Global functions | |
|---|---|
| .human_blood_meal_rate | Source code |
| AL_params | Man page |
| ATSB_adjusted_mortality | Source code |
| CorrelationParameters | Man page |
| DHA_PQP_params | Man page |
| SP_AQ_params | Man page |
| account_for_tbv | Source code |
| adult_mosquito_model_update | Source code |
| approx_sum | Source code |
| aquatic_mosquito_model_update | Source code |
| arab_params | Man page |
| asymptomatic_infectivity | Source code |
| attach_rtss_dose_listeners | Source code |
| average_p_repelled | Source code |
| average_p_successful | Source code |
| bednet_decay | Source code |
| bernoulli | Source code |
| bernoulli_multi_p | Source code |
| bernoulli_multi_p_cpp | Source code |
| between | Source code |
| biting_effects_individual | Source code |
| bitset_at | Source code |
| bitset_index | Source code |
| bitset_index_cpp | Source code |
| blood_immunity | Source code |
| blood_meal_rate | Source code |
| boost_immunity | Source code |
| calculate_R_bar | Source code |
| calculate_TBA | Source code |
| calculate_TRA | Source code |
| calculate_carrying_capacity | Source code |
| calculate_clinical_infections | Source code |
| calculate_eir | Source code |
| calculate_eq | Source code |
| calculate_foim | Source code |
| calculate_infections | Source code |
| calculate_infectious | Source code |
| calculate_infectious_compartmental | Source code |
| calculate_infectious_individual | Source code |
| calculate_initial_ages | Source code |
| calculate_initial_counts | Source code |
| calculate_omega | Source code |
| calculate_rtss_antibodies | Source code |
| calculate_rtss_efficacy | Source code |
| calculate_tbv_antibodies | Source code |
| calculate_treated | Source code |
| calculate_zeta | Source code |
| carrying_capacity | Source code |
| clinical_immunity | Source code |
| create_adult_mosquito_model | Source code |
| create_adult_solver | Source code |
| create_aquatic_mosquito_model | Source code |
| create_aquatic_solver | Source code |
| create_asymptomatic_update_listener | Source code |
| create_biting_process | Source code |
| create_compartmental_rendering_process | Source code |
| create_dosage_renderer | Source code |
| create_events | Source code |
| create_exponential_decay_process | Source code |
| create_history | Source code |
| create_infection_update_listener | Source code |
| create_mda_listeners | Source code |
| create_mortality_process | Source code |
| create_mosquito_emergence_process | Source code |
| create_prevelance_renderer | Source code |
| create_processes | Source code |
| create_progression_process | Source code |
| create_rate_listener | Source code |
| create_rtss_booster_listener | Source code |
| create_rtss_efficacy_listener | Source code |
| create_rtss_epi_process | Source code |
| create_rtss_mass_listener | Source code |
| create_seasonal_booster_scheduler | Source code |
| create_solver_stepping_process | Source code |
| create_tbv_listener | Source code |
| create_total_M_renderer_compartmental | Source code |
| create_variable_mean_renderer_process | Source code |
| create_variables | Source code |
| create_vector_count_renderer_individual | Source code |
| death_rate | Source code |
| distribute_nets | Source code |
| effective_biting_rates | Source code |
| eggs_laid | Source code |
| equilibrium_total_M | Source code |
| fast_weighted_sample | Source code |
| find_birthrates | Man page Source code |
| fun_params | Man page |
| gamb_params | Man page |
| get_age | Source code |
| get_birthrate | Source code |
| get_correlation_parameters | Man page Source code |
| get_equilibrium_population | Source code |
| get_gonotrophic_cycle | Source code |
| get_human_population | Source code |
| get_parameters | Man page Source code |
| get_treatment_coverages | Source code |
| history_at | Source code |
| history_push | Source code |
| human_blood_meal_rate | Source code |
| human_pi | Source code |
| in_age_range | Source code |
| incidence_renderer | Source code |
| indoor_spraying | Source code |
| initial_immunity | Source code |
| initial_mosquito_counts | Source code |
| initial_state | Source code |
| intervention_coefficient | Source code |
| inverse_param | Source code |
| invlogit | Source code |
| itexp | Source code |
| log_uniform | Source code |
| match_timestep | Source code |
| mean_param | Source code |
| parameterise_mosquito_equilibrium | Man page Source code |
| parameterise_mosquito_models | Source code |
| parameterise_solvers | Source code |
| parameterise_total_M | Man page Source code |
| peak_season_offset | Man page Source code |
| prob_bitten | Source code |
| prob_repelled_bednets | Source code |
| prob_spraying_repels | Source code |
| prob_survives_bednets | Source code |
| prob_survives_spraying | Source code |
| probability_of_detection | Source code |
| rainfall | Source code |
| random_seed | Source code |
| remove_keys | Source code |
| remove_unused_equilibrium | Source code |
| reset_target | Source code |
| rtexp | Source code |
| run_simulation | Man page Source code |
| run_simulation_with_repetitions | Man page Source code |
| sample_bitset | Source code |
| sample_intervention | Source code |
| sample_maternal_immunity | Source code |
| schedule_infections | Source code |
| schedule_vaccination | Source code |
| set_atsb | Man page Source code |
| set_bednets | Man page Source code |
| set_clinical_treatment | Man page Source code |
| set_demography | Man page Source code |
| set_drugs | Man page Source code |
| set_equilibrium | Man page Source code |
| set_mass_rtss | Man page Source code |
| set_mda | Man page Source code |
| set_rtss_epi | Man page Source code |
| set_smc | Man page Source code |
| set_species | Man page Source code |
| set_spraying | Man page Source code |
| set_tbv | Man page Source code |
| severe_immunity | Source code |
| simulate_bites | Source code |
| simulate_infection | Source code |
| solver_get_states | Source code |
| solver_step | Source code |
| spraying_decay | Source code |
| throw_away_nets | Source code |
| to_char_vector | Source code |
| translate_equilibrium | Source code |
| translate_parameters | Source code |
| unique_biting_rate | Source code |
| update_severe_disease | Source code |
| vcapply | Source code |
| vlapply | Source code |
| vnapply | Source code |
| weibull_survival | Source code |
