Man pages for paleovar/SISAL.AM
SISAL age modelling
| add_hiatus | Add artificial hiatus date to the input dating files for... |
| age_model | StalAge Age model 1.0 |
| AM_SISAL | Run age models for chosen entities. |
| composite_link_entity | composite_link_entity |
| d13C | d13C |
| d18O | d18O |
| dating | dating |
| dating_lamina | dating_lamina |
| entity | entity |
| entity_link_reference | entity_link_reference |
| eval | Evaluate SISAL chronology. |
| filter_SISAL | Filter SISAL db for records of class I to IV. |
| gap | gap |
| get_bacon_median_quantile | Determine median and quantiles for Bacon MC ensemble. |
| get_lin_interp | Linear interpolation for single MC simulation. |
| get_median_quantiles | Determine median and quantiles for MC ensemble; not Bacon. |
| hiatus | hiatus |
| linear_regression | Linear regression slopes and intecepts for single MC... |
| lin_reg_ages | Interpolate ages using lin. reg. for single MC simulation;... |
| lin_reg_no_hiatus | Interpolate ages using lin. reg. for single MC simulation; no... |
| mc_ensemble | Generate age ensembles depending on AM method. |
| mc_linInt | Generate lin. interp. ensemble. |
| mc_linReg | Generate lin. reg. ensemble. |
| merge_SISAL_chrono | Build SISAL chronology. |
| notes | notes |
| original_chronology | original_chronology |
| plot_AM | Plots successfully executed AM. |
| plotAMC | Plot summary plot. |
| plot_IQR | Plots IQRs of successfully executed AM. |
| plot_sisal_eval | Heatmap plot of the evaluated SISAL chronology. |
| reference | reference |
| runBacon | Age model function for Bacon. |
| runBchron | Age model function for Bchron. |
| runLinInterp | Age model function for linear interpolation. |
| runLinReg | Age model function for linear regression. |
| run_SISAL_chrono | Run AM for single entity_id. |
| runStalAge | Age model function for StalAge |
| sample | sample |
| scan | Broadly scan dating file for reversals/outliers and increase... |
| scan_fine | Fine scan dating input for reversals/outliers and increase... |
| scan_fine_lin_interp | Fine scan dating input for reversals/outliers and increase... |
| scan_lin_interp | Braodly scan dating input for reversals/outliers and increase... |
| sisal_chronology | sisal_chronology |
| site | site |
| slope | Determines slope of three adjacent dates to determine... |
| write_files | Write age model input data |
