Man pages for paravian/nitro
Integration of TNT in R
| AbstractCharacterMatrix | Abstract character matrix |
| AbstractExtension | Abstract extension |
| AbstractResamplingOptions | Define options common to resampling analyses |
| AbstractSectorialSearchOptions | Define options common to sectorial searches |
| BootstrapOptions | Set options for bootstrap resampling |
| BranchBreakingOptions | Set options for branch breaking |
| BranchSupportOptions | Set options for branch support calculation |
| BranchSwappingOptions | Define a branch swapping analysis |
| c.AbstractCharacterMatrix | Concatenate character matrices |
| canale_2022 | Canale et al. (2022) matrix |
| CommandQueue | Command Queue |
| ConstrainedSectorialSearchOptions | Set options for a constrained sectorial search |
| ConstraintBaseOptions | Set constraints on monophyly |
| ContinuousMatrix | Continuous character matrix |
| create_matrix | Create a new character matrix |
| create_new_object | Create a new object |
| DiscreteMatrix | Discrete character matrix |
| DrivenSearchOptions | Set options for driven searches |
| ExclusiveSectorialSearchOptions | Set options for an exclusive sectorial search |
| execute_analysis | Execute CommandQueue |
| ImpliedWeightingOptions | Set options for implied weighting |
| JackknifeOptions | Set options for jackknife resampling |
| MonophylyConstraintOptions | Set constraints on monophyly |
| new_search_config | Create a new search configuration |
| OutputParser | Output parser for TNT |
| print.MultiCharacterMatrix | Print MultiCharacterMatrix object |
| RandomSectorialSearchOptions | Set options for a random sectorial search |
| RatchetOptions | Set options for parsimony ratchet |
| raven_2017 | Raven and Maidment (2017) matrix |
| SymmetricResamplingOptions | Set options for symmetric resampling |
| tnt_attach | Register TNT executable |
| TreeAnalysis | Define tree searches |
| TreeAnalysisResults | Results of a tree analyses |
| TreeDriftingOptions | Set options for tree drifting |
| TreeFusingOptions | Set options for tree fusing |
| TreeHybridizingOptions | Set options for tree hybridizing |
