Files in parklab/r-scan2
Single Cell ANalysis 2
DESCRIPTION
LEGACY_README
NAMESPACE
R/accessors.R
R/binned_counts.R
R/cigar.R
R/compute.R
R/depth.R
R/fitting.R
R/gatk_processing.R
R/genomes.R
R/mutburden.R
R/mutsig_rescue.R
R/permute.R
R/pipeline.R
R/plotting.R
R/routines.R
R/scan2.R
R/sensitivity.R
R/shared.R
R/show.R
R/sigprofilermatrixgenerator.R
R/summary.R
R/tabix.R
R/test.R
R/vary_params.R
R/vcf.R
README.md
conda-recipes/BSD_2_CLAUSE_LICENSE
conda-recipes/README
conda-recipes/build_r-scan2.sh
conda-recipes/build_r-sigprofilermatrixgeneratorr.sh
conda-recipes/build_sigprofilermatrixgenerator.sh
conda-recipes/build_sigprofilerplotting.sh
conda-recipes/r-scan2/build.sh
conda-recipes/r-scan2/meta.yaml
conda-recipes/r-sigprofilermatrixgeneratorr/build.sh
conda-recipes/r-sigprofilermatrixgeneratorr/meta.yaml
conda-recipes/sigprofilermatrixgenerator/meta.yaml
conda-recipes/sigprofilerplotting/meta.yaml
data/indel.artifact.signature.v1.rda
data/snv.artifact.signature.v3.rda
inst/extdata/hg38___hg38.rda
inst/extdata/hs37d5___GRCh37.p13.rda
inst/extdata/legacy_chr22_bulk_combined_4_files_cigars.tab.gz
inst/extdata/legacy_chr22_bulk_combined_4_files_cigars.tab.gz.tbi
inst/extdata/legacy_chr22_cigardata.tab.gz
inst/extdata/legacy_chr22_cigardata.tab.gz.tbi
inst/extdata/legacy_chr22_config.yaml
inst/extdata/legacy_chr22_cross_sample_panel.tab.gz
inst/extdata/legacy_chr22_cross_sample_panel.tab.gz.tbi
inst/extdata/legacy_chr22_fits.rda
inst/extdata/legacy_chr22_indel_somatic_genotypes.rda
inst/extdata/legacy_chr22_integrated_table.tab.gz
inst/extdata/legacy_chr22_integrated_table.tab.gz.tbi
inst/extdata/legacy_chr22_mmq1.tab.gz
inst/extdata/legacy_chr22_mmq1.tab.gz.tbi
inst/extdata/legacy_chr22_mmq60.tab.gz
inst/extdata/legacy_chr22_mmq60.tab.gz.tbi
inst/extdata/legacy_chr22_phased_all.vcf.gz
inst/extdata/legacy_chr22_phased_all.vcf.gz.tbi
inst/extdata/legacy_chr22_resampling_details.rda
inst/extdata/legacy_chr22_sc_combined_4_files_cigars.tab.gz
inst/extdata/legacy_chr22_sc_combined_4_files_cigars.tab.gz.tbi
inst/extdata/legacy_chr22_sc_dptab.rda
inst/extdata/legacy_chr22_snv_somatic_genotypes.rda
inst/extdata/legacy_tiny_bulk_combined_4_files_cigars.tab.gz
inst/extdata/legacy_tiny_bulk_combined_4_files_cigars.tab.gz.tbi
inst/extdata/legacy_tiny_cigardata.tab.gz
inst/extdata/legacy_tiny_cigardata.tab.gz.tbi
inst/extdata/legacy_tiny_config.yaml
inst/extdata/legacy_tiny_cross_sample_panel.tab.gz
inst/extdata/legacy_tiny_cross_sample_panel.tab.gz.tbi
inst/extdata/legacy_tiny_fits.rda
inst/extdata/legacy_tiny_indel_somatic_genotypes.rda
inst/extdata/legacy_tiny_integrated_table.tab.gz
inst/extdata/legacy_tiny_integrated_table.tab.gz.tbi
inst/extdata/legacy_tiny_mmq1.tab.gz
inst/extdata/legacy_tiny_mmq1.tab.gz.tbi
inst/extdata/legacy_tiny_mmq60.tab.gz
inst/extdata/legacy_tiny_mmq60.tab.gz.tbi
inst/extdata/legacy_tiny_phased_all.vcf.gz
inst/extdata/legacy_tiny_phased_all.vcf.gz.tbi
inst/extdata/legacy_tiny_resampling_details.rda
inst/extdata/legacy_tiny_sc_combined_4_files_cigars.tab.gz
inst/extdata/legacy_tiny_sc_combined_4_files_cigars.tab.gz.tbi
inst/extdata/legacy_tiny_sc_dptab.rda
inst/extdata/legacy_tiny_snv_somatic_genotypes.rda
inst/extdata/mm10___mm10.rda
src/Makevars
src/laplace.c
