Man pages for patelm9/cartographR2
| add_terms_to_corpus | Corpus Functions |
| amend_key_words | Interactively collect keywords associated with a concept that... |
| brake_if_na | Brakes if a value is NA |
| brake_if_nrows_dont_match | Brake if nrows don't match between dataframes |
| brake_if_timestamp_not_std | Stops the script and asks the user to press enter if a... |
| collect_key_words | Interactively collect keywords associated with a concept that... |
| collect_query_terms | Interactively collect phrases that will be used in the WHERE... |
| filter_for_date | Filters a dataframe for a date in YYYY-mm-dd format in a... |
| filter_for_today | Filters a dataframe for today's date in a timestamp column |
| find_bibliotech_paths | Gets all the full file paths in biblio-tech for function... |
| format_source_redcap_data_dictionary | Parses source redcap data dictionary to IDENTITY format |
| funnel_ask_athena | Query based on search terms the funnels in the order it is... |
| generate_next_id_number | Generate next ID number |
| load_and_filter_key_for_current_version | Gets KEY data and cleans up based on parameters |
| load_corpus | Corpus Functions |
| loosely_ask_athena | Query based on search terms that does not write to catalogue |
| loosely_ask_misterconso | Query based on search terms that does not write to catalogue |
| loosely_ask_radlex | Loosely asks RadLex v4 |
| numbers2words | Converts numbers to numbers as words |
| parse_redcap_boolean_values | Parses 'yesno' field types as permissible values |
| parse_redcap_permissible_values | Parses REDCap Permissible Values |
| process_new_redcap_data_dictionary | Process new redcap data dictionary into the parsed, IDENTITY... |
| query_cui_in_umls | Queries cui in UMLS in MRCONSO table of metathesaurus |
| query_key | Queries key |
| query_lookup | Queries lookup |
| redcap_identity_from_csv | Gets IDENTITY data and cleans up based on parameters |
| return_athena_net | Writes Athena CONCEPT table NET |
| return_mrconso_net | Returns MRCONSO NETS that match the phrase |
| return_omop_domain_ids | Returns all possible OMOP domains in Athena |
| strictly_ask_athena | Query based on search terms that does not write to catalogue |
| strictly_ask_misterconso | Query based on search terms |
| strictly_ask_radlex | Strictly ask RadLex v4 |
| trimis | Trims extra spaces within strings |
| write_athena_net | Writes Athena CONCEPT table NET |
| write_first_lookup | Write the first lookup file For a new vocabulary to query for... |
| write_mrconso_net | Writes a MRCONSO NET file if one does not exist for the given... |
| write_mrconso_net_from_vector | Writes a MRCONSO NET file if one does not exist for the given... |
| write_radlex_lookup_only | Writes Athena CONCEPT table NET |
