Man pages for patelm9/cartographR4

add_to_keyAdds a new key data to the existing key as indicated by the...
amend_key_wordsInteractively collect keywords associated with a concept that...
collect_key_wordsInteractively collect keywords associated with a concept that...
collect_query_termsInteractively collect phrases that will be used in the WHERE...
create_redcap_parsed_dataParses source redcap data dictionary to IDENTITY format
find_all_umls_strs_in_athenaThis function takes all the possible strings associated with...
find_bibliotech_pathsGets all the full file paths in biblio-tech for function...
funnel_ask_athenaQuery based on search terms the funnels in the order it is...
list_var_pvs_in_docxLists variables with each unique pv in a dataframe to a docx...
load_keyGets KEY data and cleans up based on parameters
loosely_ask_athenaQuery based on search terms that does not write to catalogue
loosely_ask_misterconsoQuery based on search terms that does not write to catalogue
loosely_ask_radlexQueries RadLex.xls as if it is a database
parse_redcap_boolean_valuesParses 'yesno' field types as permissible values
parse_redcap_permissible_valuesParses REDCap Permissible Values
read_keyReads key
read_lookupReads lookup
redcap_identity_from_csvGets IDENTITY data and cleans up based on parameters
return_athena_netWrites Athena CONCEPT table NET
return_mrconso_netReturns MRCONSO NETS that match the phrase
return_omop_domain_idsReturns all possible OMOP domains in Athena
search_keySearch key for a term that is not specific and requires input...
search_key_as_local_librarySearches local library concepts in key by only searching...
search_lookupSearches a given lookup for a keyword
search_omop_keySearch OMOP key for a term
search_umls_keySearch umls key for a term
split_keySplits KEY into PRECOORDINATED and ONE_TO_ONE or VARIABLE and...
strictly_ask_athenaQuery based on search terms that does not write to catalogue
strictly_ask_misterconsoQuery based on search terms
strictly_ask_radlexQueries RadLex.xls as if it is a database
write_athena_netWrites Athena CONCEPT table NET
write_mrconso_netWrites a MRCONSO NET file if one does not exist for the given...
write_mrconso_net_from_vectorWrites a MRCONSO NET file if one does not exist for the given...
patelm9/cartographR4 documentation built on April 8, 2020, 7:21 p.m.