Files in pbs-assess/gfvelocities

Spatiotemporal modelling of groundfish biomass densities in response to climate

R/calcslope.R R/make-dvocc-data.R R/make-trend-data.R R/make_prediction_grid.R R/mature-biomass-est.R R/maturity.R R/plot-clusters.R R/plot-coefs.R R/plot-conditional-effects.R R/plot-gamm-coefs.R R/plot-maps.R R/plot-vocc-interaction.R R/quiver.R R/spatiotemporal-data.R R/survey-data-processing.R R/utility-functions.R R/vocc-dist.R R/vocc-gradient.R README.md analysis/VOCC/1-render-maturity.R analysis/VOCC/1-split-biomass-by-maturity.Rmd analysis/VOCC/2-biomass-depth-only-model.Rmd analysis/VOCC/2-biomass-depth-only-model2.Rmd analysis/VOCC/2-check-biomass-grads.Rmd analysis/VOCC/2-improve-biomass-models.Rmd analysis/VOCC/2-render-biomass-model.R analysis/VOCC/3-render-biotic-vocc.R analysis/VOCC/3-vocc-dist.Rmd analysis/VOCC/4-fishing-trend.Rmd analysis/VOCC/4-pool-biotic-vocc.R analysis/VOCC/4-prep-var-vocc.R analysis/VOCC/5-add-null.R analysis/VOCC/5-life-history-stats.R analysis/VOCC/6-vocc-regression.R analysis/VOCC/7-coef-plots.R analysis/VOCC/8-behav-functions.R analysis/VOCC/9-predictions-vs-obs.R analysis/VOCC/9-test-VoCC.R analysis/VOCC/maturity-test.R analysis/VOCC/meta-analytic-model/vocc-regression-functions.R analysis/VOCC/plot-tv-depths.R analysis/get-setup/0-packages.R analysis/get-setup/get-combined-covariates.R analysis/get-setup/get-data.R analysis/get-setup/get-fishing-intensity.R analysis/get-setup/get-footprint.R analysis/get-setup/get-sensor-do-data.R analysis/get-setup/get-substrate.R analysis/get-setup/get-temp-data.R analysis/tmb-sensor-explore/0-packages.R analysis/tmb-sensor-explore/2-fit-temperature.Rmd analysis/tmb-sensor-explore/3-fit-do.Rmd analysis/tmb-sensor-explore/4-climate-predictions.R man/add_colours.Rd man/add_missing_depths.Rd man/calcslope.Rd man/chopstick_slopes.Rd man/coef_scatterplot.Rd man/collapse_outliers.Rd man/dist_based_vocc.Rd man/dotplot_error.Rd man/effect_plot.Rd man/firstup.Rd man/geom_quiver.Rd man/interaction_df.Rd man/interp_survey_bathymetry.Rd man/make_gradient_brick.Rd man/make_raster_brick.Rd man/make_trend_data.Rd man/make_vector_data.Rd man/plot_chop_est.Rd man/plot_chopstick_slopes.Rd man/plot_clusters.Rd man/plot_coefs.Rd man/plot_facet_map.Rd man/plot_fuzzy_chopsticks.Rd man/plot_gradient_vocc.Rd man/plot_mat_ogive.Rd man/plot_parametric.Rd man/plot_raw_chopsticks.Rd man/plot_survey_sets.Rd man/plot_vocc.Rd man/raster_slopes.Rd man/scale_predictors.Rd man/shortener.Rd man/slope_scatterplot.Rd man/spatiotemporal_grid.Rd man/split_catch_maturity.Rd man/tidy_survey_sets.Rd man/trim_vector_data.Rd man/vocc_gradient_calc.Rd ms/make-figs.R ms/make-supp-figs.R ms/make-tables.R