.gitattributes
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/AdaptiveCover.R
R/BallCover.R
R/CoverRef.R
R/FixedIntervalCover.R
R/Mapper-package.r
R/RcppExports.R
R/RestrainedIntervalCover.R
R/cutoff_methods.R
R/data.R
R/gromov_hausdorff.R
R/hausdorff.R
R/landmarks.R
R/mapper.R
R/mapperRef.R
R/multiscale.R
R/segment_tree.R
R/union_find.R
README.md
appveyor.yml
data/noisy_circle.RData
data/wvs_us_wave6.RData
docs/LICENSE-text.html
docs/articles/Mapper.html
docs/articles/Mapper_files/figure-html/unnamed-chunk-1-1.png
docs/articles/Mapper_files/figure-html/unnamed-chunk-4-1.png
docs/articles/Mapper_files/figure-html/unnamed-chunk-5-1.png
docs/articles/Mapper_files/figure-html/unnamed-chunk-6-1.png
docs/articles/Mapper_files/htmlwidgets-1.4/htmlwidgets.js
docs/articles/Mapper_files/pixiplex_vis-0.0.2/pixiplex.min.js
docs/articles/Mapper_files/pixiplex_vis-binding-0.2/pixiplex_vis.js
docs/articles/ShapeRecognition.html
docs/articles/ShapeRecognition_files/CanvasMatrix4-2016/CanvasMatrix.src.js
docs/articles/ShapeRecognition_files/crosstalk-1.0.0/css/crosstalk.css
docs/articles/ShapeRecognition_files/crosstalk-1.0.0/js/crosstalk.js
docs/articles/ShapeRecognition_files/crosstalk-1.0.0/js/crosstalk.js.map
docs/articles/ShapeRecognition_files/crosstalk-1.0.0/js/crosstalk.min.js
docs/articles/ShapeRecognition_files/crosstalk-1.0.0/js/crosstalk.min.js.map
docs/articles/ShapeRecognition_files/htmlwidgets-1.4/htmlwidgets.js
docs/articles/ShapeRecognition_files/jquery-1.11.3/jquery-AUTHORS.txt
docs/articles/ShapeRecognition_files/jquery-1.11.3/jquery.js
docs/articles/ShapeRecognition_files/jquery-1.11.3/jquery.min.js
docs/articles/ShapeRecognition_files/jquery-1.11.3/jquery.min.map
docs/articles/ShapeRecognition_files/pixiplex_vis-0.0.2/pixiplex.min.js
docs/articles/ShapeRecognition_files/pixiplex_vis-binding-0.2/pixiplex_vis.js
docs/articles/ShapeRecognition_files/rglWebGL-binding-0.100.19/rglWebGL.js
docs/articles/ShapeRecognition_files/rglwidgetClass-2/rgl.css
docs/articles/ShapeRecognition_files/rglwidgetClass-2/rglClass.src.js
docs/articles/UsingCustomCover.html
docs/articles/community.html
docs/articles/elephant_gh_res.png
docs/articles/extra/API_Guide.html
docs/articles/extra/community.html
docs/articles/gh_shapes_res.png
docs/articles/index.html
docs/articles/pixiplex_prev.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/index_files/figure-html/unnamed-chunk-13-1.png
docs/index_files/figure-html/unnamed-chunk-14-1.png
docs/index_files/figure-html/unnamed-chunk-16-1.png
docs/index_files/figure-html/unnamed-chunk-17-1.png
docs/index_files/figure-html/unnamed-chunk-4-1.png
docs/index_files/figure-html/unnamed-chunk-5-1.png
docs/index_files/htmlwidgets-1.4/htmlwidgets.js
docs/index_files/pixiplex_vis-0.0.2/pixiplex.min.js
docs/index_files/pixiplex_vis-binding-0.2/pixiplex_vis.js
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/AdaptiveCover.html
docs/reference/BallCover.html
docs/reference/CoverRef.html
docs/reference/FixedIntervalCover.html
docs/reference/FixedRectangularCover.html
docs/reference/Mapper.html
docs/reference/MapperRef.html
docs/reference/RestrainedIntervalCover.html
docs/reference/RestrainedRectangularCover.html
docs/reference/as_grapher.html
docs/reference/as_igraph.html
docs/reference/as_pixiplex.html
docs/reference/bin_color.html
docs/reference/compute_edges.html
docs/reference/compute_k_skeleton.html
docs/reference/compute_vertices.html
docs/reference/construct_k_skeleton.html
docs/reference/construct_nerve.html
docs/reference/construct_pullback.html
docs/reference/cover.html
docs/reference/covers_available.html
docs/reference/cutoff_first_bin.html
docs/reference/cutoff_first_threshold.html
docs/reference/dashboard.html
docs/reference/exportMapper.html
docs/reference/figures/figure_eight.png
docs/reference/figures/figure_eight_grapher.png
docs/reference/figures/igraph_ex.png
docs/reference/figures/mapper_logo.png
docs/reference/figures/mapper_sticker.png
docs/reference/figures/noisy_circle_sideplot.png
docs/reference/figures/unnamed-chunk-14-1.png
docs/reference/figures/unnamed-chunk-5-1.png
docs/reference/gromov_hausdorff.html
docs/reference/hausdorff_distance.html
docs/reference/index.html
docs/reference/landmarks.html
docs/reference/multiscale.html
docs/reference/noisy_circle.html
docs/reference/plot.Mapper.html
docs/reference/print.Mapper.html
docs/reference/segment_tree.html
docs/reference/simplex_tree.html
docs/reference/simplicial_complex.html
docs/reference/union_find.html
docs/reference/use_clustering_algorithm.html
docs/reference/use_cover.html
docs/reference/use_data.html
docs/reference/use_distance_measure.html
docs/reference/use_filter.html
docs/reference/wvs_us_wave6.html
hexbin/sticker.R
index.Rmd
index.md
index_files/figure-gfm/unnamed-chunk-14-1.png
index_files/figure-gfm/unnamed-chunk-17-1.png
index_files/figure-gfm/unnamed-chunk-18-1.png
index_files/figure-gfm/unnamed-chunk-5-1.png
man/AdaptiveCover.Rd
man/BallCover.Rd
man/CoverRef.Rd
man/FixedIntervalCover.Rd
man/Mapper.Rd
man/MapperRef.Rd
man/RestrainedIntervalCover.Rd
man/as_igraph.Rd
man/as_pixiplex.Rd
man/bin_color.Rd
man/construct_k_skeleton.Rd
man/construct_nerve.Rd
man/construct_pullback.Rd
man/covers_available.Rd
man/cutoff_first_bin.Rd
man/cutoff_first_threshold.Rd
man/exportMapper.Rd
man/figures/figure_eight.png
man/figures/igraph_ex.png
man/figures/mapper_logo.png
man/figures/mapper_sticker.png
man/figures/noisy_circle_sideplot.png
man/figures/unnamed-chunk-14-1.png
man/figures/unnamed-chunk-5-1.png
man/gromov_hausdorff.Rd
man/hausdorff_distance.Rd
man/landmarks.Rd
man/multiscale.Rd
man/noisy_circle.Rd
man/print.Mapper.Rd
man/segment_tree.Rd
man/union_find.Rd
man/use_clustering_algorithm.Rd
man/use_cover.Rd
man/use_data.Rd
man/use_distance_measure.Rd
man/use_filter.Rd
man/wvs_us_wave6.Rd
pkgdown/_pkgdown.yml
src/Makevars
src/MultiScale.h
src/RcppExports.cpp
src/SegmentTree.cpp
src/SegmentTree.h
src/UnionFind.cpp
src/UnionFind.h
src/cover.cpp
src/dist_utilities.cpp
src/dist_utilities.h
src/gromov_hausdorff.cpp
src/landmarks.cpp
src/multiscale.cpp
src/sequence.cpp
src/skeleton.cpp
src/skeleton.h
tests/testthat.R
tests/testthat/helper-mapper.R
tests/testthat/test_covers.R
tests/testthat/test_dashboard.R
tests/testthat/test_filters.R
tests/testthat/test_gh.R
tests/testthat/test_mapper.R
tests/testthat/test_multiscale.R
tests/testthat/test_shiny.R
tests/testthat/test_uf.R
vignettes/Mapper.Rmd
vignettes/ShapeRecognition.Rmd
vignettes/ShapeRecognition_cache/html/__packages
vignettes/ShapeRecognition_cache/html/unnamed-chunk-6_cbfa994db7ae76ab43d5c69646674acb.RData
vignettes/ShapeRecognition_cache/html/unnamed-chunk-6_cbfa994db7ae76ab43d5c69646674acb.rdb
vignettes/ShapeRecognition_cache/html/unnamed-chunk-6_cbfa994db7ae76ab43d5c69646674acb.rdx
vignettes/UsingCustomCover.Rmd
vignettes/elephant_gh_res.png
vignettes/elephant_view.R
vignettes/extra/community.Rmd
vignettes/gh_shapes_res.png
vignettes/landmarks.rds
vignettes/pixiplex_circle_ex.png
vignettes/shape_ecc.rds