API for percyfal/ripr
Repeat Induced Point mutations in R
| Global functions | |
|---|---|
| .create_query_subject | Source code |
| .nextAlignmentChunk | Source code |
| .process_header | Source code |
| .repeatMaskerAlignment | Source code |
| .scan_line | Source code |
| .valid.AlignmentItem | Source code |
| .valid.AlignmentPairs | Source code |
| .valid.RepeatAlignmentItem | Source code |
| .windowPlot | Source code |
| AlignmentItem | Source code |
| RIPCompositeIndex | Source code |
| RIPProductIndex | Source code |
| RIPSubstrateIndex | Source code |
| RepeatAlignmentItem | Source code |
| `%||%` | Source code |
| asRepeatMaskerAnnotation | Source code |
| autoplot.AlignmentItemList | Source code |
| autoplot.AlignmentPairsList | Source code |
| autoplot.GRanges | Source code |
| autoplot.GRangesList | Source code |
| compact | Source code |
| escape_special_chars | Source code |
| expectedWindowScores | Source code |
| expectedWindowScores.GRanges | Source code |
| makeNullRIPScores | Source code |
| makeWindows | Source code |
| makeWindows.DNAStringSet | Source code |
| plot.AlignmentItemList | Source code |
| plot.AlignmentPairsList | Source code |
| plot.GRanges | Source code |
| plot.GRangesList | Source code |
| sample | Source code |
