Files in peterbchi/evolclustR

Manuscript Code/Figure2/Fig2_null1.pdf Manuscript Code/Figure2/LCO_generator_all_n.R Manuscript Code/Figure2/Make_Figure2.R Manuscript Code/Figure2/Test1_null_all.R Manuscript Code/Figure3/Fig3_radius.pdf Manuscript Code/Figure3/Make_Figure3.R Manuscript Code/Figure3/Test1_alt_1ax8_findrad.R Manuscript Code/Figure3/Test1_alt_1d4t_findrad.R Manuscript Code/Figure3/Test1_alt_2i0q_findrad.R Manuscript Code/Figure4/Fig4_null2.pdf Manuscript Code/Figure4/Make_Figure4.R Manuscript Code/Figure4/Test1_alt_all.R Manuscript Code/Figure4/Test2_null_115new.R Manuscript Code/Figure4/Test2_null_65new.R Manuscript Code/Figure4/Test2_null_9new.R Manuscript Code/Figure5/Fig5_roc.pdf Manuscript Code/Figure5/Make_Figure5.R Manuscript Code/Figure5/Test1_alt_all.R Manuscript Code/Figure5/Test2_null_65new.R Manuscript Code/Figure5/Test2_surface2_rads.R Manuscript Code/Figure5/Test2_surface3_rads.R Manuscript Code/Figure5/Test2_surface4_rads.R Manuscript Code/Figure6/Figure6.pdf Manuscript Code/Figure6/MakeFig6.R Manuscript Code/Figure6/Test2_surface3_hominoid_1AX8.R Manuscript Code/Figure6/Test2_surface3_macaca_1AX8.R Manuscript Code/FigureS1/Suppl_Fig1.R Manuscript Code/FigureS1/Suppl_Fig1.pdf Manuscript Code/FigureS1/Test2_surface2_rads_1AX8.R Manuscript Code/FigureS1/Test2_surface2_rads_1D4T.R Manuscript Code/FigureS1/Test2_surface2_rads_2I0Q.R Manuscript Code/FigureS2/Suppl_Fig2.R Manuscript Code/FigureS2/Suppl_Fig2.pdf Manuscript Code/FigureS2/Test1_alt_finddists.R Manuscript Code/LCO_generator_all_n.R R/assigngam.R R/calcsasa-old.R R/calcsasa.R R/countneighbors.R R/countsubs.R R/finddist.R R/findneighbors.R R/fractions-old.R R/fractions.R R/fractions_old.R R/fractions_subsonly.R R/fractions_subsonly_old.R R/generateonesub.R R/generatesasanull.R R/generatesasasubs.R R/generatesubs - old.R R/parsePDB.R R/permute.R R/permuteone.R R/permutetest.R R/readdssp.R R/readsubrecon.R R/tailproptest.R R/yutest.R README.md man/count.neighbors.Rd man/find.neighbors.Rd man/fractions.Rd