| addCor | add correlations of off-diagonal OMEGA and SIGMA elements to... |
| addOmegaCorr | Deprecated: use addCor. Add correlations to parameter table |
| addTAPD | Add time since previous dose to data, time of previous dose,... |
| cc | Create character vectors without quotation marks |
| checkColRow | check that col.row is not edited in Nonmem control stream |
| cl | Define a vector with factor levels in the same order as... |
| cleanSpaces | Drop leading, trailing and repeated spaces in character... |
| colLabels | Extract column labels as defined in SAS |
| compareCols | Compare elements in lists with aim of combining |
| count_ij | Assign i and j indexes based on parameter section text |
| deprecatedArg | Report if an argument is deprecated. |
| dims | Get dimensions of multiple objects |
| dt2mat | Convert a data.table of parameter estimates to a matrix |
| editCharCols | Replace strings in character character columns of a data set |
| egdt | Expand grid of data.tables |
| filePathSimple | Clean and standardize file system paths |
| findCovs | Extract columns that vary within values of other columns |
| findVars | Extract columns that vary within values of other columns in a... |
| flagsAssign | Assign exclusion flags to a dataset based on specified table |
| flagsCount | Create an overview of number of retained and discarded... |
| fnAppend | paste something before file name extension. |
| fnExtension | Change file name extension |
| getArgs | Get provided arguments as a named list |
| getFilePaths | Internal interpretation of file specification options |
| getLines | read lines as needed |
| initsToExt | Convert inits elements to a parameter data.frame |
| is.NMdata | Check if an object is 'NMdata' |
| itriag | Row numbers of elements in a triangular representation of a... |
| jtriag | Column numbers of elements in a triangular representation of... |
| listMissings | List rows with missing values across multiple columns |
| lstExtractTime | Extract run time from output control stream |
| mat2dt | upper or lower triangle or all values of a matrix as... |
| mergeCheck | Merge, order, and check resulting rows and columns. |
| messageWrap | Pretty wrapping of lines in NMdata vignettes |
| NMapplyFilters | Translate filters in Nonmem and apply to data |
| NMcheckColnames | Compare $INPUT in control stream to column names in input... |
| NMcheckData | Check data for Nonmem compatibility or check control stream... |
| NMcheckDataFile | check input data based on control stream |
| NMcode2R | Translate Nonmem $PK, $PRED sections or other Nonmem code to... |
| NMdataConf | Configure default behavior of NMdata functions |
| NMdataConfOptions | Get NMdataConf parameter properties |
| NMdataDecideOption | Determine active parameter value based on argument and... |
| NMdataGetOption | Look up default configuration of an argument |
| NMdataOperations | Basic arithmetic on NMdata objects |
| NMexpandDoses | Transform repeated dosing events (ADDL/II) to individual... |
| NMextractDataFile | Extract the data file used in a control stream |
| NMextractText | Versatile text extractor from Nonmem (input or output)... |
| NMgenText | Generate text for INPUT and possibly DATA sections of NONMEM... |
| NMinfo | Get metadata from an NMdata object |
| NMisNumeric | Test if a variable can be interpreted by Nonmem |
| NMorderColumns | Standardize column order in Nonmem input data |
| NMreadCov | Read in data file |
| NMreadCsv | Read input data formatted for Nonmem |
| NMreadExt | Read information from Nonmem ext files |
| NMreadInits | Tabulate information from parameter sections in control... |
| NMreadParsText | Read comments to parameter definitions in Nonmem control... |
| NMreadPhi | Read information from Nonmem phi files |
| NMreadSection | Extract sections of Nonmem control streams |
| NMreadShk | Read Shrinkage data reported by Nonmem |
| NMreadTab | Read an output table file from Nonmem |
| NMreadTabSlow | Read Nonmem table files without assumptions about what tables... |
| NMrelate | Relate parameter names and variables based on control stream... |
| NMreplaceDataFile | Replace data file used in Nonmem control stream |
| NMscanData | Automatically find Nonmem input and output tables and... |
| NMscanInput | Find and read input data and optionally translate column... |
| NMscanMultiple | Run NMscanData on multiple models and stack results |
| NMscanTables | Find and read all output data tables in Nonmem run |
| NMstamp | stamp a dataset or any other object |
| NMtransInp | translate the column names according to the $INPUT section of... |
| NMwriteData | Write dataset for use in Nonmem (and R) |
| NMwriteSection | Replace ($)sections of a Nonmem control stream |
| print.summary_NMdata | print method for NMdata summaries |
| reduceTables | reduce tables from NMscanTables to fewer objects |
| renameByContents | Rename columns matching properties of data contents |
| searchColRow | Check row identifier in a model for necessary properties. |
| splitFields | splitFields splits the fields format string into the... |
| summary.NMdata | summary method for NMdata objects |
| tmpcol | generate a name for a new data column that is not already in... |
| triagSize | Calculate number of elements for matrix specification |
| uniquePresent | Extract unique non-missing value from vector |
| unNMdata | Remove NMdata class and discard NMdata meta data |
| writeNMinfo | Do the actual writing of meta data |
