Files in philliplab/yasss

Yet Another Short Sequence Simulator

R/RcppExports.R R/arg_set.R R/consensusMatrix.R R/dsum.R R/fibo_test.R R/fitness.R R/fitness_evaluator_homology.R R/fitness_evaluator_uniform.R R/fitness_processing_metrics.R R/genealogy.R R/linkage.R R/memoiseCache.R R/mutator_general.R R/mutator_uniform.R R/random_utils.R R/recombination.R R/sim_next_gen.R R/sim_pop.R R/sim_proc_many_pops.R R/zzz.R README.md man/assign_fitness.Rd man/check_arg_collection.Rd man/check_arg_set.Rd man/check_dcollection.Rd man/check_dcollection_df.Rd man/check_dsum.Rd man/check_fitness_evaluator.Rd man/check_fitness_evaluator_result.Rd man/check_fitness_processing_metrics.Rd man/check_genealogy.Rd man/check_genealogy_fitness_score.Rd man/check_genealogy_gen_num.Rd man/check_genealogy_id.Rd man/check_genealogy_n_mut.Rd man/check_genealogy_parent_id.Rd man/check_genealogy_structure.Rd man/check_genealogy_the_seq.Rd man/check_many_pops.Rd man/consensusMatrix_character.Rd man/cpp_fibo_exported.Rd man/dcollection_to_df.Rd man/fitness_evaluator_homology_fun.Rd man/fitness_evaluator_uniform_fun.Rd man/fitness_processing_metrics_to_df.Rd man/get_fit_offspring.Rd man/gfo_internal_Rdf.Rd man/gfo_internal_Rvec.Rd man/h2fs_univariate_linear_fun.Rd man/linkage_diseq.Rd man/make_genealogy.Rd man/memoiseCache.Rd man/mutator_checks_general.Rd man/mutator_uniform_fun.Rd man/recombine_gen.Rd man/recombine_seqs.Rd man/restart_r.Rd man/sim_next_gen.Rd man/sim_pop.Rd man/sim_proc_many_pops.Rd man/summarize_dmat.Rd tests/testthat.R tests/testthat/test_arg_set.R tests/testthat/test_consensusMatrix.R tests/testthat/test_cpp_mutator_uniform.R tests/testthat/test_dsum.R tests/testthat/test_fitness.R tests/testthat/test_fitness_evaluator_homology.R tests/testthat/test_fitness_evaluator_uniform.R tests/testthat/test_fitness_processing_metrics.R tests/testthat/test_genealogy.R tests/testthat/test_integration.R tests/testthat/test_linkage.R tests/testthat/test_memoiseCache.R tests/testthat/test_mutator_general.R tests/testthat/test_mutator_uniform.R tests/testthat/test_recombination.R tests/testthat/test_sim_next_gen.R tests/testthat/test_sim_pop.R tests/testthat/test_sim_proc_many_pops.R tests/testthat/test_summarize_dmat.R vignettes/cpp_computations.Rmd vignettes/sim-pid-data.Rmd vignettes/yasss-design.Rmd