Man pages for philliplab/yasss
Yet Another Short Sequence Simulator
| assign_fitness | Assign fitness to sequences |
| check_arg_collection | Checks an arg_collection (skeleton only) |
| check_arg_set | Checks an arg_set (skeleton only) |
| check_dcollection | Checks a dcollection list |
| check_dcollection_df | Checks the result of dcollection_to_df |
| check_dsum | Checks a dsum list |
| check_fitness_evaluator | General fitness_evaluator checker |
| check_fitness_evaluator_result | General checks for the result of a fitness evaluator |
| check_fitness_processing_metrics | Checks that a list tracking the fitness_processing_metrics is... |
| check_genealogy | Check genealogy |
| check_genealogy_fitness_score | Check the fitness_score column in a genealogy |
| check_genealogy_gen_num | Check the gen_num column in a genealogy |
| check_genealogy_id | Check the id column in a genealogy |
| check_genealogy_n_mut | Check the n_mut column in a genealogy |
| check_genealogy_parent_id | Check the parent_id column in a genealogy |
| check_genealogy_structure | Check the column names in a genealogy |
| check_genealogy_the_seq | Check the the_seq column in a genealogy |
| check_many_pops | Checks the results produced by sim_proc_many_pops |
| consensusMatrix_character | Computes a consensus matrix. |
| cpp_fibo_exported | Test function |
| dcollection_to_df | Convert dcollection into a data.frame |
| fitness_evaluator_homology_fun | The homology based fitness_evaluator |
| fitness_evaluator_uniform_fun | The uniform fitness_evaluator |
| fitness_processing_metrics_to_df | Converts a fitness_processing_metrics list to a data.frame |
| get_fit_offspring | Retrieves the fit offspring with fit ancestry |
| gfo_internal_Rdf | Internal function implementing get_fit_offspring using... |
| gfo_internal_Rvec | Internal function implementing get_fit_offspring using... |
| h2fs_univariate_linear_fun | Univariate linear conversion between homology and... |
| linkage_diseq | Computes the linkage disequilibrium for a set of sequences |
| make_genealogy | Constructs a genealogy |
| memoiseCache | Cache a function call with an associated seed value |
| mutator_checks_general | General mutation checker |
| mutator_uniform_fun | The uniform mutator |
| recombine_gen | Recombines sequences in a generation |
| recombine_seqs | Recombines two sequences |
| restart_r | Restart R |
| sim_next_gen | Simulate the next generation |
| sim_pop | Simulates evolution of DNA of a population |
| sim_proc_many_pops | Simulate and process many populations |
| summarize_dmat | Summarize distance matrix |
