phillipnicol/SITH: A Spatial Model of Intra-Tumor Heterogeneity
Implements a three-dimensional stochastic model of cancer growth and mutation similar to the one described in Waclaw et al. (2015) <doi:10.1038/nature14971>. Allows for interactive 3D visualizations of the simulated tumor. Provides a comprehensive summary of the spatial distribution of mutants within the tumor. Contains functions which create synthetic sequencing datasets from the generated tumor.
Getting started
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Package details |
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| Author | Phillip B. Nicol |
| Maintainer | Phillip B. Nicol <philnicol740@gmail.com> |
| License | GPL (>= 2) |
| Version | 1.1.0 |
| URL | https://github.com/phillipnicol/SITH |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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