Files in phillipnicol/SITH
A Spatial Model of Intra-Tumor Heterogeneity
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/RcppExports.R
R/generateTumor.R
R/progDAG.R
R/sequencing.R
R/spatial.R
R/utils.R
R/visualize.R
README.Rmd
README.md
README_files/figure-gfm/unnamed-chunk-4-1.png
README_files/figure-gfm/unnamed-chunk-5-1.png
README_files/heat_color_tumor.png
README_files/normal_color_tumor.png
SITH.Rproj
cran-comments.md
man/SITH-package.Rd
man/bulkSample.Rd
man/plotSlice.Rd
man/progressionChain.Rd
man/progressionDAG_from_igraph.Rd
man/randomBulkSamples.Rd
man/randomNeedles.Rd
man/randomSingleCells.Rd
man/simulateTumor.Rd
man/singleCell.Rd
man/spatialDistribution.Rd
man/visualizeTumor.Rd
src/RcppExports.cpp
src/gillespie-9d7910b8.o.tmp
src/gillespie.cpp
src/gillespie.h
src/main.cpp
src/neighbors.h
src/postproc.cpp
src/postproc.h
src/sampler.h
src/simulations.cpp
src/simulations.h
src/simutils.cpp
src/simutils.h
tests/testthat.R
tests/testthat/test-simulation.R
vignettes/.gitignore
vignettes/SITH.Rmd
