API for plbaldoni/mixHMM
Differential Peak Calling via Hidden Markov Model With Mixture of Negative Binomial Distributions
| Global functions | |
|---|---|
| FUN | Source code Source code Source code Source code Source code |
| H3K36me3 | Man page |
| HMM.enumerate | Source code |
| Viterbi | Source code |
| agg | Source code |
| controlPeaks | Man page Source code |
| cutoff | Man page Source code |
| generateHMM | Source code |
| hg19.blacklist.v2 | Man page |
| hmm2_P1 | Source code |
| hmm2_P2 | Source code |
| hmm2_logB | Source code |
| hmm2_logF | Source code |
| hmm_P1 | Source code |
| hmm_P2 | Source code |
| hmm_logB | Source code |
| hmm_logF | Source code |
| makeBed | Man page Source code |
| mixHMM | Man page |
| mixHMMConstr | Man page Source code |
| mixHMMDataSetFromBam | Man page Source code |
| mixHMMdiffConstr | Man page |
| mixZIHMMConstr | Man page Source code |
| plotPeaks | Man page Source code |
| simulateHMM | Man page Source code |
| vecData | Source code |
