Man pages for plbaldoni/mixHMM
Differential Peak Calling via Hidden Markov Model With Mixture of Negative Binomial Distributions
| controlPeaks | Control parameters for mixHMM |
| cutoff | Determine posterior probability cutoff given an FDR threshold |
| H3K36me3 | ChIP-seq read counts of H3K36me3 from adipose nuclei, bone... |
| hg19.blacklist.v2 | Blacklisted genomic regions for functional genomics analysis... |
| makeBed | Create a BED file from an output of mixHMM |
| mixHMM | Three-state HMM with mixture model for differential peak... |
| mixHMMConstr | Three-state HMM with mixture model for differential peak... |
| mixHMMDataSetFromBam | Create a mixHMMDataSet from a set of BAM files |
| mixHMMdiffConstr | Three-state HMM with mixture model for differential peak... |
| mixZIHMMConstr | Three-state HMM with mixture model for differential peak... |
| plotPeaks | Create a plot of ChIP read counts with called peaks and... |
| simulateHMM | Simulate a hidden Markov model path (HMM) |
