Man pages for popovs/OPPtools
This package contains tools and templates to analyze seabird tracking data
| aou_species | American Ornithological Society official checklist of North... |
| bbox_at_zoom | Defines a bounding box at a specified zoom level around a set... |
| change_yaml_matter | Change YAML header content |
| CIDA_drive_path | Get CIDA drive path |
| colCRS | Define a custom equal-area CRS centered on your study site |
| convertIntervalNotation | Convert Interval Notation |
| cpf_report_params | Report analysis parameters for central place foragers |
| createGrid | Create a base grid for kernel calculations |
| CreateProject | Create Project Directory + readme files |
| CreateReadMe | Create ReadMe.md files |
| ctcrw_interpolation | Interpolate GPS locations at a set time interval using a... |
| getDist | Calculate the distance between consecutive points |
| list_kables | List tables with the same columns |
| mb_cols | List additional columns available for download |
| murres | Example GPS tracks from thick-billed murres breeding at Coats... |
| nLevelsP | Get pretty number of levels |
| nrowP | Get pretty numbers of rows |
| opp2KBA | Converts movebank data to format required for track2KBA |
| opp_bbmm | Calculate Brownian Bridge Movement Model (bbmm) kernels |
| opp_download_data | Download OPP tracking data from Movebank |
| opp_explore_trips | Explore trip data within given tracks |
| opp_find_minDist | Explore how different values of minDist influence total... |
| opp_get_trips | Identify foraging trips in tracking data |
| opp_href | Calculate median href for kernel density estimates |
| opp_kernel | Calculate traditional kernel density estimates |
| opp_logger_dotplot | Plot tracking history by date, year, Movebank ID, and... |
| opp_map | Plot raw tracks from Movebank download |
| opp_map_indUD | Map and compare different UD smoothers for individual tracks |
| opp_map_keyareas | Maps result from track2KBA::findSite() |
| opp_map_tracks | Creates maps of biologger tracks from output of opp2KBA,... |
| opp_movebank_key | Set Movebank credentials |
| opp_plot_repAssess | Custom plot of representativeness assessment from... |
| opp_render_diagnostic | Render diagnostic report for a given species |
| opp_render_report | Render KBA report for a given species |
| opp_retrieve_mb_cred | Retrieve stored Movebank credentials |
| opp_sites | Delineate sites of importance for OPP emergency response |
| opp_step | Calculate median step length for kernel density estimates |
| opp_study_summary | Get summary of Movebank studies associated with OPP |
| pipe | Pipe operator |
| plot_interp_dist | Plot interpolated tracks obtained using ctcrw_interpolation() |
| plot_trip_dist | Plot trips identified using opp_get_trips() |
| prep_ecotone | Prepare raw Ecotone data for Movebank upload. |
| prep_pathtrack | Prepare Pathtrack data for Movebank upload. |
| ProjectAnalyst | Get Project Analyst |
| ProjectName | Get Project Name |
| ProjectPI | Get PI Name |
| pvalr | Pretty p-values |
| removeAnalyst | Remove Default Analyst from ~/.Rprofile |
| Round | Round and don't drop trailing zeros |
| setAnalyst | Set Default Analyst Value |
| setPermanentAnalyst | Set Default Analyst Value |
| SetProjectAnalyst | Set Project Analyst |
| SetProjectData | Set data for project |
| SetProjectName | Set Project Name |
| SetProjectPI | Set PI Name |
| sum_ignore_NA | Sum ignoring NAs |
| sum_trips | Calculate trip summaries |
| ud_stack | Stack kernel UD objects into a population level kernel |
| ud_vol | Extract 50% and 99% volume contours from kernels |
| vec_power | Vectorized power estimates |
